Astyanax mexicanus (Mexican tetra): 103029279
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Entry
103029279 CDS
T05042
Symbol
dennd4a
Name
(RefSeq) C-myc promoter-binding protein isoform X1
KO
K20163
DENN domain-containing protein 4
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
amex04131
]
103029279 (dennd4a)
Membrane trafficking [BR:
amex04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
103029279 (dennd4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DENN
uDENN
dDENN
PPR_2
PPR_3
DUF2464
PPR_long
PPR
Motif
Other DBs
NCBI-GeneID:
103029279
NCBI-ProteinID:
XP_007249221
Ensembl:
ENSAMXG00000003173
UniProt:
W5K6L7
A0A8B9JYZ4
LinkDB
All DBs
Position
9:complement(23598304..23633252)
Genome browser
AA seq
1741 aa
AA seq
DB search
MEDKSPRVADYFVVAGLTDSSKPFEEDVTSDEGCQRTSAQPKAPITDVAVVIRSQGEEVP
RGYTCIDCTPSGLPAELNGGSLMGPQIFLCYRRGRDKPPLTDLGVLYEWREKLKPGCHII
QTTPSGRPANISSSSSQRIYITYRRAHESNSHASLAVTDICVIIPGKGETPPHAFCKVDK
NLNSSMWGSSVYLCYKKSLAKTNTLAFKAGLLSRYPEEDYESFPLPESVPLFCLPMGASI
ECWPSHTKYSLPVFSTFVLTGASGEKVYGAAIQFYESYPEERLTDRQRSQLGLHSSGLKN
DDSMTVQTNKSICLLSHWPFFDAFRSFLTFLYRYSISGPHTLPIEKHISHFMHKVPFPSS
QRPRILVQLSPHDSLMLSQPVSSPLPLSGGRLSTLLLNLGPKNAVSLLVLAVTEHKILVH
SLRPAVLTSVTEALVSMIFPFHWPCPYIPLCPLALADVLSAPCPFIVGVDSRYFDLYEPP
ADISCVDLDTNTISHKEDRRALTWKILPRKACKHLINTLSDLHQQLLESYQLSREEGQME
AAMSERDLGTGVKSLQTLELEIQEAFLRFMAAILKGYRSYLLPITQAPSEKATDASSLFD
LQGFLKSRDRSHQKFYSLMTKTQMFIRFIEECSFVSDKDASLAFFDDCVDKLFGTEKERK
VDSERPEDTRLIELDKSHRSEHTVYITPPELPPVPDGEEPSMLYSYGGFPVLNAELCEPQ
EYASVPKATSAPRHTSPGSPAAIFRRSKQEIKSAQRTAKTYSSIPQMWSKCLLRHCHGLW
FICLPTYVAACHSKVRALRTAYDVLRKMQDKKLQPPDEVCYRILMQLCGQYGQPVLAVRV
LFEMKKAGVQPNAITYGYYNRAVLESTWPSSTRGGYFLWGKLRNVVRGVVQFKQVWKRQA
GQPKDTHLSDASDLDSVSHGSLDSTNDSAERASIDTDFTKMDSSDDGASTGGQSDQGYDS
LSKEEVRIGAGEEQDASPNMKEKKERVSSPLSETEASRKEDYSPALRPASSSSLQDSLFG
ALPKRPNSLDIFGEKAIKPSTLDLSSGLPADISNPTATQEHKQNSPDAKMEEEEEEMDEG
AMKAAVERSASCTVTMETGVAMVRGHSGVERSASCSGALGRGVARTGIEAGFDPLSLLVA
ESQIKTEESDEASGVPSARRDLAEEIQLYMEHLSSPISQRSLSTDLRGLQSLQSPSPLGS
PRPAALHGSPTSSGYLQPQPRSRLFSSPSLPQGRPCRSKEPRPTSLASPSSPTHSTSSFS
MDSLLTPTLDVFKSSFLSAGKGVAEKASRLYSRLSSQTSLAQDQNSDRVSVSSLGSGDPD
CSSLFEGEPSPDPESLSSPQRDASLNVTRPRRSPRRNSRCLESPSAPPRLFRQASLTSSS
LAVVRVPQTPDMCPDASLAQAHQNYAIEVRMSNCSRCNTCECLVYDEEIMAGWTADDSNL
NSTCPFCGSPFLPLLNVDIRDLTGQGRTSCQDLSSSQTELNEALETQKEQSPSSESTGSP
SSNTSRSTEPVTVPYLSPLVLWKELESLLENEGDKAISSAAIVDHHPIVFWNLVWFFRRL
ELPSNLPALILSSKHCSFDEQLLQSSASEDSKNVLVQILWDNPKLHQDPISPCYTLWNTY
SANPTSFGPLLEEEPAVSLEVLQSVVRSIQKNDVYQPMSQILQLLGTRLGFIRQRSLYRD
LLFLSLVALGKNSINIDAFDREYKMAYDRLTPSQVKMTQNCDRPPSAGVMECRRTFGLPS
L
NT seq
5226 nt
NT seq
+upstream
nt +downstream
nt
atggaggacaaaagcccacgtgtagcagactactttgtggtggcgggcctgaccgattct
tctaagccttttgaggaggatgtgacttcagatgaaggatgccagaggacctctgctcaa
cccaaggctcccatcaccgatgtggcagtggtgattcgctcccagggtgaggaggtgcca
cggggatacacctgcatagattgcactccctcgggcttgcccgccgagctgaatgggggc
agcctcatgggccctcagatattcctctgttatagacgaggtcgggacaagccacctctc
actgaccttggagttctttatgagtggagggagaaactgaagccaggctgtcacattatc
cagaccacaccctccggtcgcccagccaacatcagtagttcctcctcccagaggatatac
attacgtaccggcgtgctcatgagagtaattctcatgcctcattggctgtcacagacatt
tgtgtcattattcctggcaaaggagagacaccaccacatgccttctgcaaggtggacaag
aacctcaatagcagcatgtgggggtcctctgtgtacttgtgctacaaaaagtctttggcc
aaaaccaacactcttgcattcaaagcaggtctcttgtccaggtacccagaggaggactat
gagtcattccctcttcccgagtcagtgcccctcttttgcctgccaatgggagcatcaata
gagtgttggccatctcacaccaaatactctctgcccgtcttctcaacatttgtactcact
ggagcttctggagaaaaggtttatggtgcggccatacagttttacgagtcgtaccctgaa
gagcgtttgacggacaggcaacggtcccagctgggcctgcacagcagtggcttgaagaat
gatgactccatgacagttcaaaccaacaagagcatctgccttctctctcactggcccttc
tttgatgccttccgcagttttctcaccttcctctatcgctactctatttctgggcctcac
acactgcccatcgagaagcatatttctcatttcatgcacaaagttccgttcccttcttct
caaagaccacgaattcttgtccagctatctccacatgatagtctgatgctgagccaaccg
gtgtcctctccactgcctctgagtggtggaaggctctccacactgctgctgaacctgggt
cctaagaatgcagtttctctgttagttctggctgtgactgagcacaagattttggtgcac
tctctacggccagctgtactgacaagcgtgaccgaggccctagtgtcgatgatcttcccc
ttccactggccatgtccatacattcctctatgcccgcttgcgctggcagacgtcctcagc
gctccttgcccgttcatagtcggtgtggactcgcgctattttgacctgtatgaaccaccg
gcagacattagctgtgtggacctggacactaacaccatctctcacaaagaggaccgcaga
gccctcacatggaagattctgccaaggaaagcctgcaagcatctgatcaacactctcagt
gatctccaccagcaactgctggagagttatcaactgagtcgtgaggaagggcaaatggag
gcagccatgagtgagcgagatcttggcactggtgtaaagagtcttcagactttggagcta
gagatccaagaggctttcctacgctttatggctgctattttaaagggttaccgttcctac
ttgcttcccattacccaggctccctcagaaaaagcaactgatgctagctctctctttgac
ctgcaaggtttcttgaagagccgtgaccgctcacaccagaagttctactccctcatgacc
aagactcagatgtttatccgcttcattgaagagtgctcctttgtcagcgataaggatgca
agtctggcattctttgatgactgtgttgataagctctttggcacagaaaaagaaagaaag
gtggacagtgagaggccagaggacaccaggctcattgaactggacaaatcgcatcgcagt
gagcacacagtctacatcacacccccggagctgccccctgtgcccgacggagaggagcct
tcaatgctttatagctatggtggcttccccgtgctgaatgcagagctttgtgaaccacag
gagtacgccagtgtccccaaggcgacctctgcccccagacacaccagccccggcagccct
gctgccatctttcgtcgttccaaacaggagatcaaatcagcccagcgcacggccaagacc
tactcatccatccctcaaatgtggtctaagtgtctgctgcgccactgccatggcctgtgg
ttcatctgcctgcccacttatgtggccgcttgccactccaaggtgcgggcactgcgcacc
gcctacgacgtcctaaggaagatgcaggacaaaaagttgcagccccctgatgaggtttgt
tatcggatccttatgcagctctgcgggcagtacgggcagccagtgttggctgtgagagtg
ctctttgaaatgaagaaagctggggtccaacccaacgcaataacatatggatattataac
agagctgtgttggagagcacatggccttcctccaccagagggggctatttcctgtggggg
aagttgcggaatgtagttcggggtgtggtacagttcaagcaagtgtggaagagacaggct
ggtcaacccaaagatacacatctctcagatgccagtgatctcgacagcgtgagccacggc
agtctggacagcactaatgactctgcagagcgagcctcgattgataccgacttcaccaaa
atggactccagcgatgatggagccagcacaggtggtcagtcagatcagggctatgactct
ctgtcaaaggaggaggtgcgtatcggtgcaggtgaagagcaggatgcctcccctaacatg
aaggagaaaaaagagagagtctctagcccactgtctgagacagaagcttctagaaaagag
gactactcccctgcactaagaccagcctcctcctcaagtttacaagattccctgtttgga
gcacttcctaagagacctaactcactggacatctttggagagaaggccattaagcccagt
acattagacctgagctctggtctaccagcagacatctccaatccaactgcaactcaggag
cacaagcagaactcgcctgatgcaaagatggaggaagaggaggaagaaatggacgaggga
gccatgaaagctgctgtggagagaagcgccagttgcactgtcaccatggagacaggcgtt
gccatggtgcgcgggcacagcggtgtggagcggagcgcgagctgcagcggtgctctgggc
cggggagtggctcggacggggattgaggccggctttgacccgctgtccctgctggtggca
gagagccaaataaaaaccgaggagtccgacgaggcatcaggagttccgtctgctcgccgt
gacctggccgaagaaatccagctctacatggagcacctgagcagccccatcagtcagcgc
tctctcagcacagacctgcggggccttcagagtctccagagtccttcaccactgggttcc
ccacgtccagccgctctgcatgggtcaccaactagctctggatatctgcagccacaaccc
cgcagcagactgttctcatctccttcactgccacagggacgtccatgcaggagcaaggag
ccacgaccaacctctttggcctctccctcttcccccacgcactccacctcctccttctcc
atggattccctgcttacacccacgctggatgtctttaaaagcagctttctgtctgcagga
aagggtgttgctgaaaaagccagcagactttattcaagactgtcctctcaaacatcctta
gcgcaggaccagaattctgaccgggtcagtgtgtcatcgctgggctccggtgaccctgac
tgttcctctctgtttgagggcgagcccagtccagacccagaaagtctctcctcccctcaa
cgagatgcctccctcaatgtcactcgaccaaggaggagcccgcgcaggaacagccgctgt
ctggaaagcccctctgcaccacctagactttttcgccaggcctccctgaccagctcgtca
ttggcagtggtgagagtcccacagacccctgacatgtgtcctgatgccagcctggcacag
gcccatcaaaattatgctatagaggtgcggatgtccaactgttcacgctgtaatacctgc
gagtgtctcgtgtatgatgaggagatcatggctggctggaccgctgacgactccaaccta
aacagcacctgtcccttctgtggctcgcccttcctgcccctgcttaatgtggacatcaga
gaccttactgggcagggcagaacatcttgtcaggatctgtctagttcccagacagaacta
aatgaagctttagagacccaaaaggagcaatcaccgagcagtgaatccacaggcagtccc
tccagcaatactagtagaagcacagagccagtgactgtgccttaccttagtcctctggtg
ctatggaaggagctggagagtctgctagagaatgaaggggataaggccatttcatcagca
gccatcgttgatcatcaccccattgtcttctggaacctggtgtggttcttccgcaggctg
gagctgcccagcaacctgcctgccctcatcctaagctccaagcactgcagctttgatgag
cagcttcttcagagcagtgcatcagaggacagtaagaatgtcctggtccagattctgtgg
gacaaccccaagcttcaccaggaccctatttcaccctgctacactctttggaacacatat
tctgcaaacccaacttcgtttggtcctttgctggaagaggagccggcagtgagtttggag
gtgctgcagagcgtggtcagaagcatacagaagaatgatgtctatcagcccatgagtcag
atactgcagctacttggtaccagactgggtttcatcagacaaaggagcttgtatagagat
ctcctattcttgtctctggtggctttgggaaaaaacagtattaatattgatgcttttgat
cgcgagtacaagatggcgtatgatcgtctgacccccagtcaggtcaagatgactcaaaac
tgcgaccgaccgcccagtgcaggcgtcatggagtgcaggaggacgttcgggctgccgagt
ctgtga
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integrated database retrieval system
