Astyanax mexicanus (Mexican tetra): 103029719 Help Entry 103029719         CDS       T05042                                  Symbol whrna Name (RefSeq) whirlin isoform X1   KO K21879   whirlin Organism amex  Astyanax mexicanus (Mexican tetra) Brite KEGG Orthology (KO) [BR:amex00001]  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    03037 Cilium and associated proteins [BR:amex03037]     103029719 (whrna) Cilium and associated proteins [BR:amex03037]  Primary cilia and associated proteins   USH complex and associated proteins    103029719 (whrna) SSDB OrthologParalogGFIT Motif Pfam:  PDZ PDZ_6 PDZ_2 HHD_RTEL1 USH1C_N T15H9-4_C PAH_ZNF598 DUF1722 C2H2_ASCIZ Motif Other DBs NCBI-GeneID:  103029719 NCBI-ProteinID:  XP_022532215 Ensembl:  ENSAMXG00000010561 LinkDB All DBs Position 17:complement(39619594..39894417) Genome browser AA seq 938 aa AA seqDB search MSADLELELERVSLGSSSAASSTGGSRSLSANVRRLHRALNVLLSDPEREQFVHCLNAYH ARRNVYDLVQTLRVILNVPSKRQLLPMLRLVIPRSDQLLFDQYTSEGLYIKPEPLASNGS PETPARAPIEDDARSSNSITTTATTTTGDGGSSTALVPLLGAHFVPDTPGEVRRVTLKRH KSQEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILKVNDKVFDAVTHAEAVK VLKGNKKLSMSVRSVGRIPGGYVTNHVYTWVDPQGRSVSPPPDLMEHRSATLRRNESQRR SNMQLLQEGDEKKVNLVLDDGRSLGLMIRGGAEYALGIYITGVDRSSAAECGGLKVGDQI LEVNGRSFLSIPHDEAVRVLKSSRHLMMTVKDVGRLPHARTVVGETKWIASSQITDSSSS SSVAGLSLDHGASASGKAGFYKGVAGSQVTLSSLVNQSRAMLEEQARHLLTEPERQTMNY YIQEYRDGHIGVEQLVMALFELLNTHAKFSLLSEVRGLVSAQDLERFDALVLRREIEALK ARQGAAGAAALHPDSFSMVSYPDTLASSASFMTNTTLSSARNDSVVESNGEDVQDGGNAL PDVSLDDMGSTSDSPPSFKPPPPPAVQRRPSRKSVPNKRPSSGSSQSGLYFTAPSHTPTK TNKPSRPPATLTDAPRKNPERVPVAQLSMVSKHPVGPFPRVQSPSRAKPAAVPPNPPPAP AVPAPPAPPPLSSPEKPTPSSPASNQHFVMVEVHRPNAEPDVNEVRPLPQARGEDTQHNS QGAALSQLSDSGQTLSEDSGVDIAESGRLSKDSSPRPARTRPSRESTGGGEGSAVKPPGL LEPTSTLVRVPKSSSTLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGQVILEVNG ISLRGREHREAARLIAEAFKTKEKDHVDFLITEFNVAL NT seq 2817 nt NT seq  +upstreamnt  +downstreamnt atgagcgcggatctggagctcgagctggagcgcgtgtcgctcggctcctcgtcggccgcg tcgtccaccggcggctcgcgctccctctcggcaaacgtgcggcgcctgcaccgcgcgctc aacgtgctgctgagcgacccggagcgcgagcagttcgtgcactgcctaaacgcgtaccac gcgcggcgcaacgtctacgacctcgtgcagacgctgcgcgtgatcctgaacgtgccgagt aaacggcagctgttgcccatgctgcgcctggttatcccgcgttccgaccagctgctcttc gaccagtacacgagcgaggggctctacatcaagcccgagccgctcgcgagcaacgggagc ccggagacgccggcgcgagctcccattgaggacgacgcacggagcagcaacagcatcacc accaccgcgaccaccaccaccggcgacggaggcagctcaacggcgctcgtgccgctgctg ggggcgcactttgtgccggacacccctggtgaggtcaggcgcgtgaccctaaagcgccac aagagccaggaaggcttgggcttcagcattcgcgggggctccgagcacggggtgggcatc tacgtgtccctggtggagcccggctcgctggctgagaaggaggggctgagggtcggtgac cagatcctgaaggtcaacgataaagtgtttgacgcggtcacgcacgcggaggcagtaaag gtgctgaagggcaataagaagctgtctatgtctgtgcgctctgtcggacgtattcctggt ggttatgtcaccaaccacgtctacacttgggtggatccgcagggccgcagtgtgtctcca cctccagacctgatggagcaccgcagcgccaccctgcgccggaacgagagccaacgccga agcaacatgcagctgctacaggagggcgacgagaagaaggtgaatctggtgctggacgat ggccgttctctgggtttgatgattcgcggcggggcagagtacgctcttggaatttacatc actggagtggacagaagctctgcagcagagtgtggaggactgaaggtgggcgatcagatc ttggaggtgaatgggcggagcttcctgagcatccctcacgatgaggcagtgcgagtgctg aaatcctcgcgccacctgatgatgactgtgaaggatgtgggccggctgccgcacgctcgc accgtggtgggagagacaaagtggatcgccagctcacagatcaccgacagctcgtccagc agcagtgtagcagggctttctctggatcacggagcttcagcctcaggaaaggcggggttt tataaaggtgtagcaggatctcaggtgactctctccagtctggtgaaccagagcagggcg atgctggaggaacaggccaggcacctgttaactgagcccgagagacagacgatgaactac tacatacaggagtatcgtgatggacacataggagttgagcagctggtcatggctctgttt gagctcctaaacactcatgccaagttctcgctgctgtcggaggtgcgggggctggtgagt gcgcaggatttggagcggtttgatgcgctggtgctgaggcgggagattgaggcgctgaag gctcggcagggagcggcgggagcggcggcacttcacccagattccttctccatggtgtcc taccccgacacactggcctcctctgccagcttcatgaccaacaccacgctcagctctgca cggaatgacagtgtggtggagagtaatggggaggatgtccaggacggtgggaatgccctg ccggacgtttctctggatgatatgggttccacctcagactcccctccctccttcaaaccc cctcctccccctgccgtacagcgccgccccagccgtaagtccgtccccaacaagcgtccc tcctccggctcctcccagtccggtctgtacttcaccgccccctcgcacacgcccaccaaa accaataaaccatccagaccaccagccacactcacagatgccccgagaaaaaatccagag agagtcccggtggcccagctgtccatggtcagtaagcaccctgtcggccctttccccaga gttcagtctcccagcagggccaaacctgcagcggtgccacccaatccccctccagctcca gcagtcccagctccccctgcaccacctcctctttccagcccagagaagcccaccccctcc tctcctgcctccaaccagcactttgtcatggtggaggtgcacaggcccaatgcagagcct gacgtgaacgaggtccggcctctgccccaggccagaggtgaggacacccagcataattca cagggagctgctctgtctcagctgtctgacagtggacagacgttaagcgaggacagcggt gtggacattgcagagtcaggacgtctcagcaaggacagcagccctcgtccagcccggaca cgtccttcaagagagagcacagggggaggggaggggagtgctgtcaaaccgcctggtctc ctggagcccacgtccactctggtgagggtgccgaaaagttccagcacgctgggcatcgcc attgagggaggggccaacacacgccagcccctgcctcgcatcgtcaccatacagagagga ggctcagcccataactgtggtcagctgaaggtgggtcaggtgattctggaggtgaacggg atctccctgagaggacgggagcatcgagaggcagctcgcctcatcgccgaggccttcaag accaaagagaaggaccacgtcgacttcctcatcacagagttcaacgtggcgttatag

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