KEGG   Astyanax mexicanus (Mexican tetra): 103030615
Entry
103030615         CDS       T05042                                 
Symbol
smu1b
Name
(RefSeq) WD40 repeat-containing protein SMU1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
amex  Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:amex00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:amex03041]
    103030615 (smu1b)
Spliceosome [BR:amex03041]
 Complex B
  Other components
   Complex B specific factors
    103030615 (smu1b)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st WD40_WDHD1_1st Beta-prop_THOC3 WD40_Prp19 Beta-prop_WDR36-Utp21_2nd Beta-prop_EML_2 WDR55 Beta-prop_WDR3_2nd WD40_CDC20-Fz EIF3I Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_1st WD40_Gbeta Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd LisH_TPL Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_ACSF4 Beta-prop_VPS8 NBCH_WD40 Beta-prop_SPT8 Beta-prop_Aladin Beta-prop_NWD2_C Beta-prop_DCAF4 Beta-prop_TEP1_C Ge1_WD40 Beta-prop_IFT140_1st WD40_MABP1-WDR62_1st Beta-prop_Nup120_160 Beta-prop_Vps41 Beta-prop_IFT122_1st Beta-prop_WDR41 Beta-prop_SCAP Beta-prop_HPS5 Beta-prop_WDR75_2nd WD40_RFWD3 Beta-prop_WDR35_TULP_N Beta-prop_NUP159_NUP214 Beta-prop_NOL10_N eIF2A Beta-prop_WDR19_1st PEP5_VPS11_N VPS8_N Beta-prop_IP5PC_F WD_LRWD1 Cytochrom_D1 DUF7165 Beta-prop_BBS7 BBS2_Mid LisH_PAC1 LisH Beta-prop_RSE1_2nd WDR54 PROPPIN LisH_WDR26 KNTC1_N CoA_transf_3 Beta-prop_ELP1_2nd Beta-prop_IFT122_2nd
Other DBs
NCBI-GeneID: 103030615
NCBI-ProteinID: XP_007237629
Ensembl: ENSAMXG00000010770
UniProt: A0A8B9H406
LinkDB
Position
25:23073444..23086139
AA seq 539 aa
MELDVETADVIRLIMQYLKENNLHRTLAALQEETTVSLHTVDSIDSFIADINDGHWDVVL
LAIQYLKLPDKLLIDLYEQVVLELIELRELGAAQCLLAQTDPMIMMKHTQPERYSKLEAL
LLSPHFDSKEAYPESSDKDKRRQAIAQAMAKEVSLVPPSRLMGLLGQGRICEGALYRLQE
TKALRQFGSLAVLSLKWQQHQGLLPPGMSIDLFRGKAMMKDLEEERFPTQLSRLIKFGPK
THVECARFSPDGQYLITGSVDGYIEVWDFTTGKICKDLKYQNQDNFMMMEEAVLCLAVSS
DTEMVASGAQDGQIQVWRIHNGQCLRKFERAHSKAVTCICFSKDNSQLLSASFDQIIRIH
GLKSGKMLKEFRGHASCINDITFSHNGHYIISASADGSVKVWNAKTTDCINTIKTPDVPE
GADITVNNVVLVPRNPEHFVVCNRTSTVVVMNIHGQVLRSFSTGVREGGDFVCCTLSPRG
EWIYCVGEDFVLYSFSTITGKLERTLTVHEKDVIGITHHPHNNLIATYSEDGLLKLWKP
NT seq 1620 nt   +upstreamnt  +downstreamnt
atggagctggacgtggaaaccgcagatgtgatccgcctgatcatgcagtacctgaaggag
aacaacctccaccgcacgctggccgcgctgcaggaggagaccaccgtgtctctgcacact
gtggacagcatcgacagcttcatcgcggacattaacgatggacactgggacgtggttctg
cttgccatccagtaccttaaacttcctgacaagctgctgattgatctgtatgagcaggtg
gtgctggagctgattgagctacgagagcttggagcagcccaatgtttactggctcaaacg
gatcccatgatcatgatgaagcacacccaacctgagcgctactccaagctggaagccctg
ctcttgagcccacacttcgactcaaaagaggcttatccagaaagcagcgataaagacaaa
cgcaggcaggccatagctcaagcaatggctaaagaggtcagcctggtcccaccctctcgt
ctcatgggtcttctcggacagggtcgtatatgtgaaggcgcactctacaggttacaagag
accaaagcgctcaggcagtttggatcccttgcagtcttgtctctgaaatggcaacagcac
cagggtcttctgccccctggcatgtcaatagacctgttcaggggcaaagccatgatgaag
gatctggaagaggagcgatttcctactcagctcagtcgtctcattaagtttggtccaaag
acgcatgtggagtgcgcacgcttctccccagatggtcagtacctgattacggggtcagtt
gatggctacatcgaagtgtgggatttcaccacaggcaaaatatgcaaggatctgaagtac
caaaatcaggataacttcatgatgatggaggaggctgtgttgtgtctggcagtcagtagt
gacactgagatggtggcctccggagctcaggacggccaaatccaggtatggagaatccat
aatggccagtgtctgcgcaaatttgaacgggcccacagcaaggcagtcacctgtatctgc
ttcagcaaggacaacagtcagcttttgagtgcctcctttgaccagatcatcagaattcat
ggactgaagtcaggaaagatgctgaaggagttccgaggtcatgcgtcctgcataaacgac
atcaccttctcccacaacggccactacatcatcagcgcttcagcagacggctcagtcaaa
gtctggaacgcaaagacgacagactgcatcaacaccatcaaaacgccagacgtccccgag
ggtgcagacatcacagtcaacaacgtcgttctggtgcccagaaacccagagcactttgtg
gtgtgcaacaggaccagcacagtcgtcgtgatgaacatacatggtcaggtactgaggagt
ttcagtacaggtgtgcgggagggtggggacttcgtttgctgcacattgtcccctcgtgga
gagtggatctattgcgtgggagaagactttgtgctctactcgttcagcaccatcaccggc
aagctggagagaactctcacagtgcatgagaaagatgtgattggcataacccaccaccct
cacaacaacctcatcgccacgtacagtgaggacggcctgctgaagctatggaaaccctga

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