Astyanax mexicanus (Mexican tetra): 103031018 Help Entry 103031018         CDS       T05042                                  Name (RefSeq) rootletin isoform X1   KO K16469   rootletin Organism amex  Astyanax mexicanus (Mexican tetra) Brite KEGG Orthology (KO) [BR:amex00001]  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    03037 Cilium and associated proteins [BR:amex03037]     103031018 Cilium and associated proteins [BR:amex03037]  Primary cilia and associated proteins   Other primary cilia associated proteins    103031018 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Rootletin CCDC39 ERM_helical Motif Other DBs NCBI-GeneID:  103031018 NCBI-ProteinID:  XP_049327432 LinkDB All DBs Position 24:31420560..31461664 Genome browser AA seq 2036 aa AA seqDB search MSAEESMRTEGKLEAVIQKLEESVLSEEKRLTVRGPSPDAPPTCIPARVREIVTKNLNES GGSMSSVLSLQEENRVLQGELGRLEDLLAHSRADRDELAIKYSAISERLEQALRLETGDG DRDCAESRSLAQQNVDLRRRLEEEQAAYKRKLTAYQEGQQRQAQLVQKLQAKVLQYKKKC SDLEQSLLERSSDMDQNRLSGDMSSNGQRREEDEPSSELETALIRLEEEQQRSSSLSAVN AMLREQLEQASLANEALSQDIRRLTADWTKAREELEQREADWRREEESFHNYFSSEHSRL LALWRQVVGFRRSVCELKSATERDLSHMRNEMSQVSQTVQLQCVGVCVAVRSREDGSALV LEREAAQRTALEQQLRERVTEMMNLQARSDSERAELNNRLAEAVREVERLKARKEEREYE VASLTRKLEEQSGDEESELMSLRAHTETLLDTLRDIAQAMLSDSDSGVLSSTMEGDSENS SLSLLPFLRSPSPQRPSSPRKPSVPPLPESSLSALRSMVTSRQLQLQEVRGRLQSAQSSL QQLRKQLAEAESGRREAELRVQAMQGERDDAQRERETAVKERDRMRQEREKINSERDGLQ KAAQAAQTRAELLQLECERLQQAAASAQRERDHEREEREAAVQERERAKAETLRVQTQWS QSETRGSSQRSELAAVKEALQQGEIEKQLLEAEKNQLTDALSRAESSNAELTVLVAKLHS EEAALRDSLAKMGGMNESLAQDKSDLNSIIIQLEEEKSVLLTQRREAEQEKLTIRDELVR LEQDRLELDTARLALHQQLQESELLRAGLEAELQMIKADRQKLQEKVTQLCGEVSSLGAE LGMVRGEGERQGVALEEAGRSRAELARERAGLVVQLTASERENAALTEELTALRSEREML EASLFEVQQQLVQLESRREQIETENNSLRLRSETSTAELKRLRADRENVVAQGERERAGL KQALADAQQEAQTALRNVLNDHQEELERLASEKEALRCSLEAEQEGALRRLREELEEQLR RMEREREELQEEIRTLQHQRDQRLLQAESEKQQALSLKETEKAMLSEKVCSLQAELGTAT LEVEKLSREAQNLKDQERVAVAALSVELQELRLQLEETVSSHSRELRRLQENCTDQQTRA DTTLRELEECRGLLVVCEESRDGARRDVLELEKRLCQMRDGGEGHRRDAVELRRSLSDIT KERDALSQSNGQLRDALRAAESERISVKRQCEEKEQRLTVQDETLASAQKEVGELRSCLR EVERSRLEARRELQELRRQVKVVDGEREQKGREVAELQARLSLEEQREEERGKELFSLKQ RLAEAEAGRNSLRKELTSLQKCLCDSECVWRGCERDLAAQLQEARGCEKKLQDEARNLSL RAQTAASASAQIQLQLSEAEGRLAATEAELTRSEAGRRDLEFRLISLQSALTRTLGISAG GRASRGRSPIGSSHSSLASGVVLRRRSVSPLRCSLSPPKDPVDKSSPDNTVASRPLSPER GDTPVPLLLPELDSESVRNGLRDFLQELREAQRERDEARTQCGALQRELEEVTGERDSAQ DRLSQLHNTLQECQEGKRGVDSRLSSTQAMLQQQEECVRRGERERRALTERVNELERTLQ NAETERKHLQEQCSKLRAGEVRLEAERRRLREALEGAESRATRVELGRRSLEGEIQRLRV CITERETEAQTAQERHESMLKQVVDAESRVAALQREMDRLTAVLCKVQDAECVQREKAQT VSLTLQETAAAHSATQGRLATLQKSLSTAEQDRRLLQERVDELRAALSEGKHTVASLTER VQTLQSELSQSQLRREELETELSNTQEALRQRSSALCEAQRSLQAVQTERANAEERLRAL QRAVALLETEKRDAERQAVRLEKDKNALRNTLDKVERQKLKTEESSMRLSAERGRLDLSL NTAEQELQDAQRQISLLQDELVCVREKIAVCLAQLVEMEASHTASEQSARQRDDAQREVE RLRANQREAERTLAARERAHRQRVKGLEEQVSTLKEQLQHELRRRQPSLTPMSMSN NT seq 6111 nt NT seq  +upstreamnt  +downstreamnt atgagcgctgaggagagcatgcgtacggaggggaagctggaggcggtgattcagaagctg gaggagagtgtgttatcagaggagaagaggttgacggttcgtggcccctcccctgatgcc ccgcccacctgtattcccgctcgagtaagagagatcgtcaccaagaacctgaacgaaagc gggggcagtatgtcgtcggttctgtctctgcaggaggagaaccgggttctgcagggtgaa ctcgggcgtctggaggacctgctggctcacagtcgcgcagaccgcgatgagctcgccatc aaatacagcgccatcagtgagaggttggagcaggccctgcggttggagacgggtgatggg gacagggactgtgcagagtcgcggagtctcgcccagcagaacgtggatctgcggcgccgc ctggaggaggagcaagcggcctacaaacgcaaactcaccgcctaccaggagggacagcag agacaagcccagctcgtccagaagctccaggccaaggttctccagtataagaagaagtgc agtgatttggagcagtctctgttggagaggtcgtctgatatggaccagaacagactgagt ggagacatgtccagtaatggtcagcggcgtgaggaggacgagcccagcagtgaactggag acagctcttattcgtctcgaggaggaacagcagagaagcagcagtctgtcagcggtgaac gcaatgctgcgtgaacagttggaacaggccagtctggccaatgaggcgctgagccaggac atacgcaggctcactgctgattggaccaaagcgagggaggagctggagcagagggaagct gactggaggagagaggaggagtccttccataactacttcagcagtgagcacagccgtctg ctggctctgtggcggcaggtcgtgggcttccgcaggagtgtgtgtgagctgaagagcgcc accgagagggacctgtctcacatgcgtaacgagatgtctcaggtgtctcagacagtgcag ctgcagtgtgtgggggtgtgtgtagcggtgcgcagtcgtgaggacggctcggcgctggtt ctggagcgcgaggcggcgcagaggaccgctctggaacagcagctcagagagagagtgacg gagatgatgaacctgcaggccaggagcgactctgagagagctgaactcaataacaggctg gcggaggctgtacgggaggtggagagactgaaggctcgaaaagaggagagagagtatgag gtggcatcgctcaccaggaaactggaggagcagagtggagatgaagagtcagagctcatg tcactgagagctcacactgaaactctgctggacacactgagggacatcgctcaggcgatg ttatctgactcagactctggggtgttatcgtccacgatggagggggattcagagaacagc tcattatctctattacccttcctccgctccccctccccccagcgcccctcgtccccccga aaaccctccgtccccccgctcccagagtccagcctctccgccctgcgctccatggtgacc agcagacagctccagctacaggaggtcagaggtcgtctgcagtctgcgcagtcctctctg cagcagctgcgcaaacaactggcagaggcggagtctgggaggcgggaggcggagctacgg gtgcaggcgatgcagggggagcgggacgatgctcagagagagagagagacagctgtgaaa gagagagacaggatgcgtcaggaaagagagaaaatcaacagtgagagggacgggctgcag aaggcggctcaggctgcgcagacgagagcagagctgctgcagctggagtgtgagaggctt cagcaggctgcagcgtctgcacagagagagagagaccacgagagagaggagagagaggcg gccgtgcaagagagagagcgcgccaaagctgagaccctgagagttcagactcagtggagt cagagtgagactcgtggaagctctcagcgctctgaactggctgcagtgaaggaggcgctc cagcagggggagatagagaagcagctgctggaggcggagaagaaccagctcactgatgct ctgagcagagcagagtccagtaatgctgagttaacagtgctggtagcgaagctgcactct gaggaagctgcactgagggattccttggctaaaatgggcggcatgaacgaaagcctggcc caggacaaatctgacttgaacagcatcatcatacagctggaggaggagaagagtgtcctg ctgacccagcggagagaggcggagcaggagaaactgaccatcagagacgagctggtgcgt ctggagcaggaccgcctggagctggacaccgcccgcctcgctctgcaccaacagctgcag gagtctgagctgctgagggcggggctggaggcggagcttcagatgatcaaagctgacagg cagaaactacaggaaaaagtcacacagctgtgtggtgaggtgagctccctgggggcggag ctcggcatggtccgtggtgaaggggagcgacagggtgtggctctggaggaggcggggcga agcagggcggagcttgccagggagagggcggggcttgtggtccagctaacagcatctgag agagaaaacgccgcactgactgaagagctgactgcactcaggtcggagagggagatgctg gaggcgagtctgttcgaggttcagcagcagctggtgcagctggagtctcgcagagaacag atcgaaacagaaaacaacagcctgcgactgcgcagcgaaacgagcacagccgaactgaag cgtttgcgcgcggatcgagagaacgtcgttgctcagggagagcgagaacgggcggggctt aaacaggcactggccgacgcccagcaggaggcgcaaaccgctctccgcaatgttctgaac gaccaccaggaggagctagagagactcgctagtgagaaggaggcgctgcgctgcagtctg gaggccgagcaggagggggcgctgcgccggctgagggaggagttggaggagcagctgcgc aggatggagagagagagggaggagctacaggaggagattcgaactctacagcaccagaga gaccagcgcctcctgcaggctgagagtgagaaacagcaggcgctgtctctgaaggagacg gagaaggccatgctgtcggagaaggtctgctctctgcaggctgagctgggaactgcaacg ctggaggtggaaaagctcagcagagaagctcaaaacctgaaggaccaggagagggttgca gttgctgctctaagcgtggagcttcaggagctgcggctgcagttggaggagacggtgagc tcacacagccgagagctgcgcagactgcaggagaactgcacagaccagcaaacccgtgca gacaccacactgagagagctggaggagtgtcggggtctgctggtggtgtgtgaggagagc cgagacggtgccaggcgggacgtcctggagctggagaagcgcctgtgtcagatgcgggac ggcggggaggggcaccggagagacgccgtggagctgcggcgctccctcagtgacatcacc aaagagagagacgctctcagccaatcaaacggccagctgagggacgccctcagggctgcg gagagcgagcgaatcagtgtgaagcgtcagtgtgaggagaaggagcagcgtctgaccgtg caggatgagactctggcgtctgcgcagaaggaggttggggagctgcgcagttgcctgagg gaggttgagagatcacggctggaggccaggagggagctgcaggagctgcgcagacaggtg aaggtggtggacggggagcgggagcagaaaggcagggaggtggcagagctccaggctcgt ctgtctctggaggagcagagggaggaggagcgagggaaggagcttttctccctcaaacag aggctggccgaggcagaggcaggcaggaactccctcagaaaagagctgacctccctgcag aagtgtttgtgtgacagcgagtgtgtgtggcgcggctgcgagcgggacctagctgcgcag ctgcaggaggcgcgaggctgcgagaagaagctgcaggacgaggcgaggaatctgtccctg cgggcgcagactgcggcctccgcctccgcccagatccagctgcagctgagcgaggccgag ggccggctggccgccacggaggcggagctaacgcgctcggaggcggggcgacgggacctg gagttcaggctgatcagcctgcagtcggcgctcactcgcacgctgggcatcagcgcgggg gggcgggccagccgcggacgcagccctataggctcctcccactcctccttagcgtccggg gtggtcctgcggaggaggagcgtgtccccgctgcgctgctcactgtcgccccctaaagac ccggtggataaatccagtcctgataacactgtagcatctcgtcctttatctccagaaaga ggagacactcctgttcctctccttctacctgaactcgactcagaatcagttcgtaacggc ctcagagacttcctgcaggagctccgggaggcacagagagagagggatgaagctcggacc caatgtggggctctgcagagggaactggaggaggtaacaggagaacgagactccgcccag gaccgcctctctcagctccataacacactgcaggagtgtcaggaaggtaagcgtggtgtg gacagcaggttgagctccactcaggcgatgctgcagcagcaggaggagtgtgtgaggaga ggagagagagagaggagagcgctcactgagagagtgaacgagctggagagaacactgcag aacgctgagacagagcgcaagcacctgcaggagcagtgcagtaagctgagagcgggggag gtgcgattggaggcggagaggcggagactgcgggaagctctggagggggcggagtctcgg gctacacgagtggagctggggaggcggagcctggagggagagatccagcgtcttcgagtg tgtattactgagcgagagacagaggcccagactgcacaggaacgacacgaaagcatgctc aaacaggtggtagacgctgagtctcgggtggcggctctgcagagggagatggacaggctg acggcggtgctctgtaaggtgcaggacgctgagtgtgttcagagagagaaagctcagact gtttcactcaccctgcaggagaccgccgccgcccacagcgccacccaggggcgactcgcc accctgcagaagagcctgagcacggccgagcaggaccgcagactgctgcaggagcgtgtg gatgagctgcgggcggcgctgagtgaggggaaacacacggtggcgtctcttactgagcgc gtgcaaacgctgcagtctgaactctcacaaagccaactgcggagagaagaactcgagaca gagctgtccaacacacaggaggcgctgcgtcagcgtagctctgccctctgtgaggctcag cgcagtctgcaggcggtgcagacggagcgggcgaatgcagaggagcgtctgcgagcgctg cagagagccgtggccctgctggagacggagaagagggatgctgagaggcaggcggtgcgt ctggagaaagacaagaacgcactcaggaacaccctggataaggtggagcgtcagaagctg aagacggaggagagcagcatgcgtctgtctgcagagagaggacgtctggatctgtctctg aacacagcagaacaggagctgcaggacgcacagagacagatatcactgctacaggacgag ttggtgtgtgtgagggagaagatagctgtgtgtctggctcagcttgtggagatggaagcg tctcacactgcgagcgagcagtcggcccgtcagcgtgatgatgctcagagggaggtggag cgactgagagccaatcagagagaagcagagagaacgctggcagctcgagagagagctcac agacagagagtgaaggggctggaggagcaggtgtctacactaaaggagcagctgcagcac gagttgcggcgcaggcagccgtctctgacccccatgtccatgagcaactga

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