Astyanax mexicanus (Mexican tetra): 103031118
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Entry
103031118 CDS
T05042
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X5
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amex03021
]
103031118 (chd1)
03036 Chromosome and associated proteins [BR:
amex03036
]
103031118 (chd1)
Transcription machinery [BR:
amex03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
103031118 (chd1)
Chromosome and associated proteins [BR:
amex03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
103031118 (chd1)
SLIK complex
103031118 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
103031118
NCBI-ProteinID:
XP_022521292
LinkDB
All DBs
Position
20:complement(25850124..25872390)
Genome browser
AA seq
1831 aa
AA seq
DB search
MDGRSEDESVSNSSGDSSNSEDESGSGSGSGSGSGSSSSSSSSSSSQSGSSDSGSGSDSG
SQSDSDSEKSKGKNDQDKNPAKIDTSEFWKSNPSILAVQRSAMLRKQQQQQLQQQQQQQQ
KQQQQSSSNSDSDEESSSSDDSDDDSSRKKKSKGSSDSDSGSGSGSGSGSDSSDSSAEEE
EENSEESVSDYEPSHKVKSRKPTNKTNARNGKKSKAPKKKSAGSSSEDEDDYKKALAGPR
RQATVNVSYKEDEELKTDSDDLLDVCGEDVPPPEEDEFETLERVMGIRIGRKGATGATTT
VYAVEADGDPNANFNSSKQPGDVQYLIKWKGWSHIHNTWETEETLKLQNVKGMKKLDNFK
KKEQDKKKWLKSASPEDVEYFNCQQELMDDLHSQYQLVERIIGHSNQKSAAGYPDYLCKW
QGLPYSECSWEDGALISRKFQKCIDCYMSRNQSKTIPFRDCKVLKQRPRFMPMKKQPHYI
GGDGLELRDYQLDSLNWMAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFL
LVVPLSTLTSWQREIHLWAPQMNVVVYLGDISSRNMIRTHEWMHSQTKRLKFNILLTTYE
ILLKDKSFLGNVSWAFIGVDEAHRLKNDDSLLYKTMIDFKSNHRLLITGTPLQNSLKELW
SLLHFIMPEKFHSWELFEDEHGMGRDSGYTSLHKELEPFLLRRVKKDVEKSLPAKVEQIL
RVEMSAMQKQYYKWILTRNYKALSKGTKGSTSGFLNIMMELKKCCNHCYLIKSPDDHDFY
NKAEALQHLIRSSGKLVLLDKLLVRLKERGHRVLIFSQMVRMLDILAEYLKSRQFLFQRL
DGSIKGEMRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQA
QARAHRIGQKRQVNIYRLVTKGSVEEDIIERAKKKMVLDHLVIQRMDTTGKTVLHTGAAP
SSSTPFNKEELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENDPGPSTVGEE
LLSQFKVANFTMMEEEEIDMDADGNQRNWDDIIPEEQRRRMEEEERQKELAEIYLLPRMR
NCAKQISFNGNEGRRSRNRRYSGSDSDSASDRKRPKKRGRPRTIPRENIKGFSDAEIRRF
IKSYKKFGGPLERLDAIARDAELVDKSEHDLRRLAETVHNGCVKTLRENPCGPEKTSGGR
RGKVKGPTFRISGVQVNAKLVISHEEELAPLHKAIPADPEERKRYTLPCHAKAAHFDIDW
GKEDDSSLLIGIYEYGYGSWEMIKMDPDLNLTHKLLPDDPDKKPQAKQLQTRADYLIKLL
SKDLAKKEAQRQTGNSNSRKRKPRGKKNKAVKPKVEEVPNSLSSVPPSDKSSEDEDDKVE
AKETPTAKPAAARKAKVPDRAVKEEEEEEPESEAHVKEEKEEKETKEKEVKKEIKKEKKE
EGREGKEKKEPKEKKETKPLEPVHKVEEANSEKTLDIKADIWEKSKKADTPIHITAGGET
VPISEESEELDQKTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHIT
DCLKEYSNPEQIKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQENAQAADQNTSTVN
TQSLKHADIERLKDSQQDESSRDSYSSDRHHGTSRSQEQQSKERQSSDSHRKSSDSRKRP
YPSFSNGKDHRERDRDRDRERDRDHYRDRQDSRYYSDSKHRKLDDHRSSRDHWSDSSSKD
RLHSDHRSHSDHRSHSEHRSSSDYSHHKPSRDYRYHSDWQMEHRASGSGPRSPRDQRSPY
DSRSPMGHRSPFEYSSDHKSTPEQVWSSRKT
NT seq
5496 nt
NT seq
+upstream
nt +downstream
nt
atggatggccgaagtgaagatgaaagtgtgagcaacagcagcggagattccagtaattct
gaagatgaatctggatctgggtctggatcaggctcaggttctggctccagttccagcagt
agtagctccagtagcagccagtcaggaagcagcgactcaggaagtggctcggattcgggc
agccaatctgactccgactcggagaagtctaaggggaagaatgatcaggataaaaaccct
gccaagattgatacatcagaattttggaagtcaaatcccagtatcctggcagtgcagaga
tcagccatgctcaggaaacagcagcagcaacagcttcagcagcagcaacagcagcagcaa
aagcagcagcaacagagctcctcaaatagtgactcagatgaggagtcctctagcagtgat
gactcagatgatgactcttccaggaagaaaaagagtaaagggtcttcagactctgactca
gggtccggctctgggtctggttcaggaagtgacagctctgattcttcagctgaggaagag
gaggagaacagtgaagagtctgtttcagactatgagcccagccacaaagtcaaaagcaga
aaaccaacgaacaagaccaatgccagaaatgggaaaaaaagcaaggctccaaaaaagaag
tccgcaggctcctcttctgaagacgaggacgactacaagaaggctctggcaggtcctcgg
cggcaggctacggtcaatgtgagctacaaagaggatgaagagctgaaaacggactctgat
gatctgttggacgtgtgtggggaggacgtgcccccacctgaggaggatgaatttgaaacg
ctggaaagagtgatgggcattagaataggacggaaaggagccactggggccacaaccaca
gtctatgctgttgaagctgacggggaccccaatgccaactttaactcaagcaagcagcca
ggggatgtgcagtacctgatcaaatggaagggctggtcacacattcacaatacgtgggag
actgaagagacgctaaaactgcagaatgtgaagggcatgaagaaactggacaatttcaaa
aagaaggagcaggacaaaaagaagtggctcaaaagtgcttcacctgaggatgtggagtac
ttcaactgccagcaggagctcatggacgacttgcattcgcagtatcagctcgtggagaga
attattggtcactcgaatcagaagtcagcagcaggctacccagactacttgtgcaaatgg
caaggccttccctattctgaatgcagttgggaagatggggcacttatttcacgaaagttc
cagaagtgcatagattgctacatgagccggaaccagtccaaaacgatccccttcagagac
tgcaaggttttaaagcagaggccgcggtttatgcctatgaagaaacagcctcattatatt
ggcggagatggacttgagcttagggactaccagctggacagcttgaactggatggcccat
tcatggtgcaaaggtaacagttgtattttggcagatgagatgggtctgggtaaaaccatc
cagacaatctcttttctgaactacctgttccatgagcaccagctttatgggcctttcctg
ctggtggtgcccttgtccactctcacgtcctggcagagggagatccacctttgggcccca
caaatgaatgtggtggtctacctgggagatatcagcagtaggaacatgatccggacacat
gagtggatgcattcacagaccaagcggctgaagttcaacatcctcctcactacatatgaa
atcctcctgaaagacaagtcatttctagggaatgtgagctgggcttttattggtgtggat
gaggcccaccggctgaagaatgatgattcacttctgtacaagaccatgattgacttcaaa
tccaatcaccggctccttatcacaggaacacctttgcagaactcgctgaaagagctgtgg
tctttactgcacttcatcatgccagagaagtttcactcatgggagctctttgaggatgag
cacggaatgggaagagattctggctacaccagcctgcacaaggagctggagccgttcctg
ctgcgcagggtcaagaaggatgtggagaagtcactgcctgccaaggtggaacagatcctc
agggtggagatgagtgctatgcagaaacagtactataagtggatcttgacgagaaactac
aaggctctgagtaaaggtacaaaaggaagcacgtctggcttcctcaacattatgatggag
ctgaagaagtgctgtaatcactgctacctcatcaaatcgccagacgaccatgatttctac
aacaaagcagaggccttgcaacacttaatacgcagcagtgggaagctggtcctgttggac
aagctgctggtgcgactaaaggaacgtggccaccgcgtcctcatcttttcccagatggtc
cggatgctggacatcctggctgagtacctgaagagtcgccagttcttatttcagagactg
gatggctctattaagggtgagatgaggaaacaagcgttggatcatttcaatgcagaaggc
tctgaggatttctgcttcctgctgtccacgcgagcgggtggtctgggtattaacttggca
tctgcagatactgtggtcatatttgactcagactggaacccccagaatgacctgcaggct
caggccagagctcacaggattgggcagaagagacaggtaaatatttaccgtcttgtgacc
aaaggatctgtagaagaggatattattgaaagagccaagaaaaagatggtgctggaccac
cttgtgattcagaggatggacacgacaggaaagactgtcctccatactggtgctgccccc
tccagttccacccctttcaacaaggaggagctgtcggctattctaaagtttggtgctgaa
gaactcttcaaggagccagagggagaggaacaggagcctcaggaaatggatattgatgaa
attctgaagagagcagaaaccagagaaaatgaccctggcccgtctactgtaggagaggaa
cttctctcacagtttaaggtggcaaacttcactatgatggaagaggaggagattgacatg
gacgcagatggcaaccagaggaactgggacgacattatcccagaggagcagcggcggagg
atggaggaggaggagaggcagaaggagctggcagagatctacctgcttccccgcatgagg
aactgtgccaaacagataagcttcaacggtaacgagggcagacggagtcggaacagaaga
tactctggctcagacagcgactccgcgtcagatcgaaaacggcctaagaagagaggcaga
cctcgaacgattcctagggagaatattaagggctttagtgatgctgaaatacgaagattc
attaagagctacaagaagtttgggggtcctttggaaagattggatgctattgcccgagat
gctgagttggtggataaatcggagcatgatttgaggcgactggcagaaactgtgcacaac
ggctgtgttaaaacactgagggaaaacccctgtggaccagagaagacctcaggaggcagg
cgaggcaaggtgaaaggacccactttcagaatatcaggagttcaggtcaatgctaagcta
gtaatctcacatgaggaggaactggcgcctctgcacaaggccattcctgcagacccagag
gagaggaagaggtatacacttccttgccatgcaaaggcagctcattttgatattgactgg
ggaaaagaggatgactccagcctgcttattggtatttatgagtatggctatggaagctgg
gaaatgattaaaatggacccagacctcaaccttacacataagctcttaccagatgatcca
gataaaaagccacaagcgaagcagctccagacacgagcagactacctcatcaaattgctc
agcaaggaccttgccaagaaggaggcccaaaggcaaacgggcaattctaattcacgaaag
aggaagccacgggggaagaagaacaaagctgtgaaaccgaaggtggaagaagtgcccaac
agtctgtcttctgttcctccctcagacaagagttcggaggacgaggacgacaaggtagaa
gcaaaggaaactcccactgcaaagccagcagctgctagaaaggcaaaagtccctgatcga
gctgtgaaggaggaggaagaggaggaacccgagtcagaggctcatgtcaaagaagagaag
gaggagaaggagacaaaagaaaaggaggtgaagaaagagatcaaaaaagagaagaaggag
gaaggccgagaaggcaaagagaaaaaggagccaaaggagaaaaaggagaccaagcctttg
gagcctgtgcacaaagtggaagaggcgaattcagaaaagactctggatataaaagctgat
atctgggagaagagtaaaaaggctgacactccaatccacattactgcaggaggagagacc
gttccaatctctgaggagtcagaagagcttgaccagaagactttcagtgtgtgtaaggag
cgcatgaggccagtgaaagctgctttgaaacaactggaccgtcctgagaaaggtctttca
gagcgtgaacagctggagcacactcggcagtgcctgatcaaaattggagatcacatcaca
gactgtctcaaagagtacagcaaccctgaacagatcaagcagtggagaaaaaatctttgg
atatttgtttccaaatttacggaatttgatgcaagaaaactgcataaattgtataagcat
gcaatcaagaaaagacaagaaaacgctcaggcagcggaccagaacactagcactgtaaat
acacaatcattaaaacacgcagacatcgagaggttaaaggactctcagcaagatgagagc
agcagagacagctacagctcggaccggcaccacggaacatcacgcagccaagagcagcag
agcaaagagcggcagtccagcgactcgcataggaaaagctcggacagcaggaagaggcca
tacccctccttcagcaacggcaaagaccacagagagcgagacagagaccgagaccgagaa
cgggacagagaccactacagagaccgtcaggacagcagatactacagcgacagcaagcat
aggaagctagatgatcatcgttccagtcgagaccactggtcagacagcagctctaaggac
cgcctgcactcagaccaccgatcccactctgaccaccgatcccactctgaacaccggtcc
agctctgactatagccaccacaaaccctctcgggactaccgctatcactcagactggcaa
atggagcaccgagcgtcaggcagcggaccccgttctcctcgagaccagcggtcgccgtac
gactctcgctcgcccatgggccaccggtcaccgttcgagtactcatctgaccacaagagc
acgcccgagcaggtctggagcagccgcaagacatag
DBGET
integrated database retrieval system
