Astyanax mexicanus (Mexican tetra): 103031119
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Entry
103031119 CDS
T05042
Symbol
col14a1a
Name
(RefSeq) collagen alpha-1(XIV) chain isoform X1
KO
K08133
collagen type XIV alpha
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
amex00535
]
103031119 (col14a1a)
Proteoglycans [BR:
amex00535
]
Extracellular matrix (ECM) proteoglycans
Others
103031119 (col14a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Ig_DSCAM-DSCAML_C
FN3_Tor_3rd
VWA_3
vWA_SIBA-E
Motif
Other DBs
NCBI-GeneID:
103031119
NCBI-ProteinID:
XP_049336160
LinkDB
All DBs
Position
6:complement(9338224..9458670)
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AA seq
1766 aa
AA seq
DB search
MKQFSGLRMSWFWMLVFWVMLQIFKTVNSQIAAPRKLRFKVLGSSQLHVSWKEPKGEIDG
YRLMYSSDPGGEWSEILIGKGENKAIINDFNPTKEFSVKVIAVSGNQQSRALQGNFAVEN
RESDGEDTQQQRLKDTTLTEETTQKSSLVGQFVCTTPAVADIVVLIDGSWSIGRLNFRLV
RTFLENLVNAFDVGTDKVRIGLAQYSGDPRIEWHLNAFATKEAVIDAVRNLPYKGGNTLT
GLALNYILTNSFKPESGSRSNIPKIGILVTDGKSQDAVDVPAQSLRDAGVELFAVGVKNA
DENELKIIASEPDETHVYNVADFSIMSTIVEELTRSVCDRVEQQDKEIRGDVVPEETEGA
PENLQTSDVTAQSFRVSWTHAPGRVEKYRVVYYPSKGGDPAEVVVDGSESVAVLRNLNSL
TEYEIAVFAIYTSSASDALRGSETTLALPMVTGLELYAVTHNSMRVRWQAAEGASGYTVL
YVPLSGENMTEVTVGMVETDLDLVGLSSDTEYTVTVYALFGEEASDPATAQETTLSLRPP
RNLRITEVDHSSVRLKWDAPSNSVTGYRVMYLKTGGAQTNEVELGPVSSVYLKNLASVTE
YSVAVFAVYGDGQSEALNGGFITKLVPAPLDLRISEVTSESFQVSWTQPAEGVVLYKLTW
RPLGDANNEEVVVPGDVDSYVVKDLSALTEYEVLLSAIYEDQSESSAVTGLQTTLDGITT
TTIPSTTAAVPLSAPTNLRVSEEWYNRFRISWDPPASPTSGYRITYKPTTASGRPLETYV
GEDVNSLLVLNLLSGTEYSVNVLASYGTGSSPALSGTANTLFLGVSRLNTYQIKPDSLCV
QWEPVQQASVYRVIIESLENGWRQEQSVNGGVSQECIYNLTPNTQYRISVHTLLQDLEGP
AVSTTDRTLPVPTRPPTIPPPTIPPAKEVCKAARADLVFLVDGSWSIGDDNFKKIIHFLY
STTGALDLINPEGTQVGIVQFSDDARTEFKLNSYSDKESLLDAVQRITYKGGNTKTGQAI
KHVKENIFTQEAGSRRGIPRVLVVLTDGRSQDDVNQISKDMQTEGFIIFAIGFADADYGE
LVNIASKPSERHVFFVDDLDAVKKIEEQLITFVCEAATATCPSLLMSGSTLAGFRMMEMF
GLVEKQYSNVKGVSMEPGTFNSFPCYRLHTDALVSQPTRFLHPEGLPSDYTISMLLRLLP
ETPQEPFALWEILNKDSEPLVGVVLDTSGKTLSFYNHDYMGDYQTVMFEGEEISRIFYGS
FHKLHMVVSKTSVKLVMDCRMVGQKPISAAGNITVDGVEVLGRMVRSRGKRDNSATFQLQ
MFDIVCSTSWAGRDQCCELPGLRVEQDCPALPHACTCSQESKGPPGPSGPPGGPGIRGPR
GDRGEPGSEGPQGPAGERGPPGLQGPSGPQGPSGLSMQGPPGASGEKGEKGDPGLPGAQG
IPGGNGGPGRDGPPGQRGLPGKDGPQGQMGPAGPIGSPGAPGAPGSSGPKGPHGDQGPPG
TPGTKGERGERGDLQSQAVVRSIARQVCEQLIQSHLSRYNSILNQIPSQSVSFRTVPGPP
GEPGRPGPQGQQGEQGPQGRPGFPGANGVSGRPGERGLPGEKGEKGSTGVGSQGPRGPPG
PPGPPGDGRTGSQGPPGRPGIQGTAGRPGTPGSTGPSGPPGYCDQNSCLGYNIGVQPLPP
SPYQNYGPSNANNEEEEEEEEEEDPYAGYRGYPPQYYQSNYHELQPIQNGHGYPGYPGYP
GVGHRFPRSLTENSGAPPTTQEENTH
NT seq
5301 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagttttctggtttgaggatgagctggttttggatgctagtgttttgggtgatg
ttgcagatcttcaagacagtaaacagtcagattgcggctccacggaaattacgctttaaa
gttttgggatcaagtcagttacacgtatcctggaaagagccaaaaggggaaatcgatggc
tataggttaatgtacagcagtgatccaggtggggagtggagcgagatcctgatagggaag
ggggagaacaaggcaataataaacgacttcaatcccacgaaggagttctcggtgaaggtc
atagctgtgagtggaaaccagcagagccgagctcttcaggggaactttgcggtggagaac
cgggagtctgatggcgaggacacgcagcagcagagactaaaagacaccacgcttacagag
gagacaacacagaaatcatccttagtggggcagtttgtgtgtacgaccccggcggtggcg
gacatcgtggtgctgattgacggctcgtggagtatcgggaggctgaacttccgtctggtc
cgcacgttcctggaaaacctggttaatgcctttgatgttggaactgataaagtgcgaata
ggattggcccaatatagtggagatcccaggattgagtggcatctgaatgccttcgccact
aaagaagctgtgattgatgccgtcagaaacctgccgtataaaggaggaaacacactgaca
ggtcttgccctgaactacattctgacgaacagcttcaaaccagaatctgggtctcgaagc
aacattccaaaaattggaattctggtcactgatggaaaatcccaggatgctgttgatgtt
cctgcgcagagtcttcgagatgctggagtcgaactcttcgctgttggagtaaagaatgca
gatgaaaatgaacttaaaatcatcgcctcagaaccggatgaaacacacgtctacaacgtg
gcggatttcagcatcatgagcacgattgtggaggaactgactcgctctgtgtgtgacaga
gtggagcagcaggacaaagagatcagaggagatgtggtccctgaggagacagagggcgct
cctgagaacctgcagacgtctgatgtgacggcacagagtttccgcgtgtcctggactcac
gctccgggccgtgtggagaaatacagagtggtttattatccgtctaaaggaggagaccca
gccgaggtggtggtggatggttcagagagtgtggcggtgttgaggaatctgaattctctg
acagagtacgagatcgccgtgttcgccatttacacctcctctgccagcgatgcactccgg
ggcagcgagaccacactggccctgccaatggtgactggtctagagttgtatgccgttacc
cataactccatgcgtgttcgctggcaggctgcagaaggggcttctggctacacggttctg
tacgttcctcttagtggcgagaacatgacggaggttacagtaggcatggtggagacggat
ctggatctggtgggtttgagttctgatactgaatacactgtaactgtttacgccttgttt
ggagaggaggccagtgaccccgccaccgcccaggagaccaccctgtctctaaggcctcct
cggaatctgcgcatcactgaggtggaccacagttctgttcgccttaaatgggacgcaccg
tccaacagcgttacaggataccgagtaatgtacctcaagactggaggagcacaaactaac
gaggtggagttgggccccgtctctagtgtttatctgaagaacctggcgtctgtaacagag
tacagtgtggctgtgtttgctgtttatggggacggccaatcagaagcacttaatggaggc
ttcatcacaaagctggtgcccgctccgctggacctcaggatcagtgaagtgacatcggag
agtttccaggtgagctggactcagcctgcggagggggtggtgctctataaactgacctgg
agacccctgggagatgcaaacaatgaagaggtggtggtgcctggtgatgtagactcgtat
gtggtgaaggatctctctgctctgacggagtacgaggtgctgctgtctgctatttatgaa
gatcagtctgagagcagtgctgtgactggactgcaaaccacactcgatggaatcaccacc
accaccatcccctccaccactgcagcagtacccctctctgcccccactaacctgcgagta
tctgaggaatggtataaccgctttcgcatcagctgggacccccctgcctctcccacctca
ggctacaggatcacctataaacccactacagcatcaggtcgtccactggagacgtatgta
ggtgaggatgtgaacagccttctggtcctgaacctactgagtggaaccgagtacagcgtt
aacgttctcgcctcatacggcaccggctccagcccagcactcagcggcacagccaacacc
ctgtttcttggagtgagcagactcaacacatatcagataaagcctgacagtctgtgtgtt
cagtgggagccggtccagcaggcatctgtctacagggttatcatcgagtctctagagaat
gggtggcggcaggagcagagtgtaaatgggggagtgtctcaggagtgtatctacaacctg
acacccaacactcagtaccggatcagcgtacacacactcctgcaggacctggagggtccc
gccgtcagcactactgatagaacccttccagttccaacccgaccaccaactattccaccc
ccaaccatcccaccagccaaagaggtgtgtaaagcagcgagggcggacctggtgttcctg
gtggacggatcctggagcatcggagacgacaactttaagaaaatcatccacttcctgtac
agcaccactggcgctcttgacctcattaaccctgaaggaacacaggtggggatagtgcag
ttcagtgatgacgctcggactgagtttaagctgaactcttacagtgataaagagtcgttg
ctggacgctgtgcagagaatcacctacaagggaggaaacaccaaaacaggtcaagccatt
aagcatgtgaaggagaatatcttcacgcaggaggcggggtcaaggagaggaatcccccgg
gtgctggtggtgctgacggacgggcgctcacaggacgacgtcaaccagatctccaaggat
atgcagaccgaggggtttataatctttgcgatcggcttcgctgacgcggattatggagag
ctggtcaatatcgccagtaaacccagtgagagacacgtcttcttcgtggatgatctggat
gcagtgaagaagatcgaggagcagctcataaccttcgtgtgtgaggcggcgacagccacc
tgtccctccctactgatgagtggaagcaccctggcagggttcaggatgatggagatgttt
gggctggtggagaaacagtacagtaatgtgaagggagtttctatggagcctggaaccttc
aacagcttcccctgttacagactgcacacggatgccctcgtctcacagcccactagattt
ctacacccggagggtctcccctcagactacaccatctccatgctcctccgccttctgcct
gaaacccctcaggagccctttgcattgtgggaaattcttaacaaagacagtgaacccctg
gtgggcgtggtcctggacacctctggaaaaacactgagcttctataatcacgactatatg
ggtgattatcagaccgtgatgttcgagggggaggagatcagcaggattttctacggcagt
ttccacaagctccacatggtggtcagtaagacctctgtaaagttggtgatggactgcagg
atggtgggacagaagcccatcagtgcagcggggaatatcactgtagacggcgtggaggtt
ctgggtcggatggtgcgatctcgtgggaagagagacaactctgctacattccagctgcag
atgtttgatatcgtgtgcagcacttcgtgggcggggagggatcagtgctgtgagcttcca
ggcctgagagtagaacaggactgtcctgcgctgccccatgcatgtacctgctctcaggag
agtaaaggacctccaggaccctcaggaccaccaggtggtcctggtattagaggtcctcga
ggtgatcggggggaaccaggctctgagggacctcaaggtccggctggtgaaagaggacca
ccaggactgcagggaccctctggaccacaggggccgagtgggctttccatgcaggggcca
ccgggagcttcaggggagaaaggagaaaaaggagacccaggcctgcctggtgctcagggt
ataccagggggcaacggaggacccggcagagatgggccaccgggtcagaggggtttgcca
gggaaagatggaccccaggggcagatgggcccagctggaccgattggcagtccaggagcc
cctggagctccaggatccagtggacctaaaggaccgcacggcgatcaaggacctccaggc
acccccggcaccaagggcgagcgaggagagcggggggatctgcagtctcaggcggtggtt
cgatccatagcccgacaagtgtgtgaacagctgattcagagccacctgtcccgctacaac
tctattctgaaccaaatacccagtcagtctgtgtccttccggacagtaccaggtcctcca
ggagagccaggccgaccaggaccccaaggacagcagggagaacagggtcctcagggcaga
ccaggtttccccggagctaatggggtcagtgggcgtccaggagaaagagggctcccaggg
gagaaaggagagaagggcagtacaggggtgggttcacaaggccctcgtggccccccagga
cccccaggtcctcctggagatggccggaccggaagccagggtcctccaggccggcctgga
attcagggcactgcaggacgtcctggaacccccggcagcactggaccctctggacccccg
ggttactgcgaccagaactcatgtttaggctacaatatcggagtacaaccgttacctccc
agcccctaccagaactacggaccctccaacgccaacaacgaagaagaagaggaggaggag
gaagaggaagacccgtacgccggttaccgtggttacccaccccagtactaccagtcgaac
tatcatgaacttcagcccatccagaacggtcacggctaccccggctaccccggttaccct
ggtgtcggtcaccgcttcccccgcagcctgactgaaaacagtggagctccacccacaaca
caggaggagaatacacactga
DBGET
integrated database retrieval system
