Astyanax mexicanus (Mexican tetra): 103031255
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Entry
103031255 CDS
T05042
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103031255 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amex03019
]
103031255 (patl1)
Messenger RNA biogenesis [BR:
amex03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103031255 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
103031255 (patl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
103031255
NCBI-ProteinID:
XP_007237631
Ensembl:
ENSAMXG00000010731
UniProt:
A0A3B1IM58
A0A8B9H6L8
LinkDB
All DBs
Position
25:complement(23098913..23107789)
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AA seq
771 aa
AA seq
DB search
MFRFQSFDDDCTLEEEEEGGLVEEEDEIDQFNDDTFGAGAIDDDWQEEHARLAELDGLLG
TGDSSSASAPPPAKSAALPSSFPISLSSSVPPPGLGDKPGGDLAESLTRLILGSDPAIAG
VGAAEPDRPSLTSAPSNQALPPALGAMPSSLLSYQQQQHLLHRGAGPLQQINSHSIWENS
MGFGPVSVAPGLVTHMEDSPLMSIIKEVGLPKRTPQVGREEGRDLSERVPPPRSSSPVIG
SPPVRAVPIGTPPKQPMGHALNQQIHHPTAVHVRAPVQHRYPHPFPERLSPNTLLNIANS
PLCRPPFPGVGPVLSQIQRAQLLNSQVGPFQRGPGPAPPMMPGGGGGFRPFFGQPPPRVG
PHPPHAPPPNHAPIRHNTTHLHPQHRRMLTQRMQSRGDRGGGRVGGMDRRSRDPYSNLMT
QKEKDWVARIQMMQLQSTDPYLDDYYYQNYYEKMEKRQERDRDSSRKEHTTKLITPQVAK
LEHTYRPVQFAGSLGKLTVSSVNNPRKMIDAVVTTRTDDEEKREKQVWNKRRQILYTVEK
MYSLLLEVQDFEKKFLQTPEEQRETMLEQHKTHTLQLYNSLREKEWDDRVSDEQCLMIMS
VRKGKRLVSRLMPLLPPPQAAAVVMAVARNLPALAKKDKQDQVLCWLVEPVAVVIQSMSS
SALTDLLQELQGSEGQFPRVLQNKFGVTLLYLILSEGERMQSSDPNCQLMDDNRWTELVF
SVTRELLKVPSSSLSPPLFTPPNLLSLFSRYVDRQRLELLQEKLQITALSR
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgttccgattccagtcctttgatgatgactgtactctggaggaggaggaggaagggggg
ctggtagaggaggaagatgaaatcgaccagtttaatgatgacacttttggcgccggggca
attgatgatgactggcaggaggagcatgcccggctggcagagctggatgggctgttggga
acaggtgactcctcatctgcctctgcccctcctcctgccaagagtgcagcactcccctcc
tcatttccaatatccttgtcttcctcggttcctcctcctggcttaggggacaagcctgga
ggtgatctagcagagtcgctgactcgcctcatccttggctccgatcctgccattgctgga
gtgggtgctgctgagcccgataggcccagcctcacatctgcaccttcgaatcaggcactg
cctccagcattgggtgccatgcccagttcgttgcttagctaccagcaacagcagcatctg
ctgcacagaggggcagggccgcttcagcagataaattctcacagtatttgggaaaacagt
atgggttttggtcctgttagtgtcgctcctggacttgtcactcacatggaggactctcca
ttgatgtccatcatcaaagaagtgggacttcccaaaagaacacctcaagttggcagggag
gagggtcgggacttatcggaaagagtaccacctcctcgttcctcctcccctgtaattgga
agtccacctgtaagggcagtacctattggaacgccaccaaaacaacccatgggccatgct
ctgaatcagcagatccaccatcccacagctgtgcatgtgagagctccagtgcagcaccgt
tatccccatcccttccctgagcgcctctcccccaacaccctcctcaacattgctaactct
ccactgtgccgccctccatttccaggtgtaggtccagtcctgtctcaaatacagagggcc
cagttgctcaactctcaggttggtccttttcaaaggggtcctggtccagctcctccaatg
atgcctggtgggggtgggggcttcagaccattttttgggcagcctcctcctagagtgggc
ccccatccacctcacgctccgcctcctaaccatgcacccatccggcacaacaccacgcac
ctccatccccagcaccgcaggatgcttacccagaggatgcagagcagaggcgatcgaggt
ggaggtagagtgggaggaatggacaggagaagtagggacccctatagtaatctaatgact
cagaaggagaaggactgggtagcccgcattcaaatgatgcagctccagagcactgaccct
tacctggacgactactactatcagaattattatgagaagatggaaaagcgtcaggagcgg
gacagagacagcagcaggaaggagcacaccaccaaactcatcaccccacaggtggccaag
ctagagcacacctaccggccagtccagtttgctggttctctgggtaaactaactgtctcc
agtgtaaacaaccccaggaagatgatcgacgctgtggtaacaacgcgtactgatgatgag
gagaagagagaaaaacaggtgtggaacaaaagaaggcagatcctttacactgtggaaaag
atgtacagtctgttgctggaggtgcaggactttgagaagaagtttctgcagacccctgag
gagcagagagaaactatgctggagcagcacaagacacacacactacagctctacaattca
ctccgagagaaagagtgggatgaccgagtgagtgatgagcagtgtttgatgatcatgtct
gtacgaaaggggaagcgccttgtctccaggctcatgcccttgctccctccgccacaagct
gctgccgtcgtcatggccgttgcccgcaaccttccagctctagccaagaaggacaagcaa
gatcaggtcctttgctggctggtggagccggttgcagttgtaatccagtccatgtccagc
tcagctctcactgacctattacaagaactgcagggaagtgaggggcaatttccacgagtg
ctgcaaaataagtttggtgtgacgctgctttatctgattctgagtgagggtgagagaatg
cagagctctgatcccaactgtcaactcatggatgacaatcgatggacagagttggtattc
tcagtgacgagggagcttttgaaggtcccctcctcatccctctcgcctcctctttttact
cctcccaatcttctctccctcttttcccgttatgtggacaggcagagactagagctgttg
caggagaagctacagattactgccttgtccaggtag
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