Astyanax mexicanus (Mexican tetra): 103031339
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Entry
103031339 CDS
T05042
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103031339 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amex03019
]
103031339 (edc4)
Messenger RNA biogenesis [BR:
amex03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103031339 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
103031339 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_Prp19
Beta-prop_EML_2
Beta-prop_EDC4L
Beta-prop_WDR3_2nd
WDR55
Pdc1_Ge1
Beta-prop_WDR36-Utp21_2nd
EIF3I
Motif
Other DBs
NCBI-GeneID:
103031339
NCBI-ProteinID:
XP_022535427
Ensembl:
ENSAMXG00000020531
UniProt:
A0A3B1ITR2
LinkDB
All DBs
Position
9:complement(25674968..25701427)
Genome browser
AA seq
1402 aa
AA seq
DB search
MASSSNIDIEGATQHLRDILKLDRPSNSAEAPAGESQRKTSFNGELNGLMGADLIGTGVR
TAMVEPTAHNTDKMNTTLDSQTISLSGDDGSTCIAITASNVEIIASRDSSIDSKARGSNK
VKIQPVAKYDWEHKYYYGNLIAVSNAYLAYAIRGGANNHSMIRVLRLGSSERTLLKGFTG
AVTDLAFAHLDSNLLGCVDEAGNMFIWQLSSQNSKIQDEVIVHIRRPEDTLLNSNRRLIW
CPFIPEDNEENPEDSCQTLALLHEDRAEVWDLDILRSSNSIWPVDATELKEGFITIKGHT
ARISEGALSPDGTVLATASHDGYVKFWQIYIEGQDQPSSTVSCRCLHEWQPHNGRPLSCL
LFCDNHKKQDPEVPFWRFLITGADQNQELKMWCTVSWTCLQTIKFSPDPLNSSVQPSLKA
SLDLSAECLILSDVQRKVLYVMELLQDQDKGRASFTAVSEFLLTHPVLSFGVQDVSRARL
RHTEVLPPDEESESMTAEGSQGPLESKSGIQIKLYCVHTKSLQDVQIWFQPNQGAAASLF
MPSCSGSQDGFGFADPLTDLSIEALSSDKESGGNGSQNDLCKIPALPAPADFLSPAGSAM
PKLMTPDAFMTPSASVPASPGSSASSLTIVTAMSSSDSGARAAEDLMQSPKLCTDGASSS
LALSTSSPRSSSILISGLGENIQVLPSPNPPLSLDLQAIEPILLPQASPTRARSPDVISS
ASTAMSQDIPEIASETLQRSLVGTAAEARDPLQGLHADSMASAASALHLLSPRNRNSSEP
ILLPLELGGGTTDGEQRLSNTPSLLETALSQENAAAAAAFSCSDSSANHSWPAAPDITRE
TRNSLRDNGLGDCSREDLKERHMSSPYHRRTYHLTQNDSQDASAEQSDHDDEVASLASSS
GNCGSRASHRLPVKDWKTSPRGSPKLKRKNKKEDGESSGRQADNQLSAEVQEELLLLLRS
QQRELAELRQSQQELLQRVTGHMDAVQSSIMAHVEHVLLTQQEQEQRRMERVLAEGHARN
QQLQEHMAQQLAHTLGTTLSSRLDKVLREEMKKTVPQTISKSLEPVTGQMSNTIAAKLTA
VEGTLKENVIKVVKSKNITDAIGRAAAEAMQGPIQAAYKDAFQSIVLPVFERGCQSMFQQ
INDSFKQGTHEYIQQLETHAKNRKQREQEARDPVIGQLQQMIDTLQSSQDQLATTVAAGV
RSEVQHQLHMIVGNLQDSILTQVQRIVKGEVSLAMKEQQAAVTSSIMQAMRSAAGTPVPT
AHLDYQAQQASILQLLQQGQLNEAFQQALSAADLNLVLYVCETIDSQQVFGQNPCPLHQA
VLLSLIQQLSTNLATRTDLKISYLEDAVMNLDHGDPVTRDHMSAVLSQVRQKLLQFLQQD
PHSPLSKRARRLMMMLQGLVSH
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atggcttccagttccaacatagatatagagggcgcgacccagcacctccgggacatcctg
aaactggaccgacccagtaattcagccgaggctccagcaggtgagagccaaaggaaaaca
tcttttaatggagagctgaatggactgatgggagctgacctcattggaacaggagttcgg
actgcgatggtggaaccgacagctcacaacacagataaaatgaacacaacattagactct
cagacaatttcactatctggggatgatggctctacctgcattgctatcactgccagcaat
gtggaaattattgccagccgagactctagtattgacagtaaagctcgagggagcaacaag
gttaagatccaaccagtagcaaaatatgactgggagcacaagtattattatggcaatctc
atagcagtgtctaatgcatacttggcatatgccatcagaggaggtgccaacaaccattct
atgatccgggtgctaaggctaggttcgtccgagcgcaccctgcttaagggctttactggg
gcagtcacagacctggcctttgcccaccttgattccaacctgctgggctgtgtggatgag
gctgggaacatgttcatctggcaactctccagccaaaacagcaaaatacaagacgaagtg
attgtgcacatccggagacccgaggacacgttattaaactccaaccgcaggctcatctgg
tgccccttcatccccgaggacaacgaggaaaacccagaagactcatgtcagactttggct
ctgctgcatgaggaccgggctgaggtttgggaccttgatattcttcgctcgagcaacagc
atatggcctgtggatgccacagagcttaaagaggggtttattaccattaaaggacacaca
gcgcgcatcagcgagggagctctgtcccctgatggcacagtcctggctacagccagtcat
gacggttatgtaaaattctggcagatctacatcgaaggtcaagaccaacctagttcaact
gtctcctgcagatgcctgcatgagtggcagccccataacggaaggcctctttcttgtctc
ctattctgtgacaaccacaagaaacaagatccagaagtgccattttggcgctttttaatc
actggagcggatcagaaccaggagctgaagatgtggtgcacagtgtcatggacctgcctg
cagactatcaagtttagtcctgacccgttaaactcaagtgtccagcccagtctgaaagct
agtctggatctctctgcagagtgcctcatcctctcggatgtgcagaggaaggttctgtac
gtgatggagctgcttcaggatcaggacaagggtcgggccagtttcacagctgtttcagaa
ttcctgctcacacacccagtactgagctttggagttcaggacgtcagccgtgcccgtctg
cgccacactgaagtgcttcctccagatgaggagagtgaaagcatgactgctgaaggaagc
cagggacccttggagtccaaatcgggaatccagatcaagctttactgcgtgcatacaaag
tcccttcaggatgtgcagatttggttccagcccaaccagggtgctgctgcctcgttgttt
atgccttcgtgctccggctcccaggacggctttggtttcgcagatcctctgaccgatctg
agcatagaggcactgagctctgataaggagtccggtgggaacggctctcagaacgacctg
tgtaaaatccccgctctcccagctccagcggatttcctgagtcccgctggctcagccatg
cccaaactcatgacaccagacgcctttatgacccccagtgcatctgtgccagcctcccct
ggcagcagtgctagcagcttgactatagtgacagccatgagcagctcggacagtggagca
agggctgcagaggatctaatgcagagtcctaagctgtgtactgatggagccagtagcagc
cttgccctcagcactagcagtccgaggtccagctccatcctgatttcaggccttggtgaa
aacatccaggtgctgccttcaccaaaccctcccctgtccctggacctgcaggccatcgag
cccatcctactaccccaggcttcccccaccagggcccgctccccggacgtcatctcctca
gcctccacagccatgtcacaggacattccggagatcgcctcagaaactctacagagaagc
ctcgttggcacagcagctgaggctcgtgacccactgcagggtctccatgcagatagtatg
gcttctgctgcctcagccctgcatctcttgtcaccacggaaccgcaacagctcggagcca
attctcctgccgttagagctcggcggagggactacagacggtgaacagaggcttagcaat
acaccctccttactggagacggccctttcacaggaaaatgctgctgcagcggccgctttt
tcctgctccgacagcagcgctaaccacagctggcctgcggctccagacatcacacgtgaa
acgcgcaacagcctgcgggacaatgggctgggagactgctctcgagaggacctgaaggaa
aggcacatgtcatctccgtatcataggcgcacctaccacctaactcagaatgacagtcaa
gatgcaagcgcagagcagagcgatcatgatgatgaagtggccagtctggcatcatcctct
ggaaactgtggctccagagcctctcaccggctccctgtgaaggactggaagacctcaccg
cgtggctctccaaagcttaagcgcaaaaacaagaaagaggatggtgaatcttctggcagg
caggcagataaccagctgagtgcagaggtacaggaggagctgctgctgctgctgagaagc
cagcagagggagctggctgagctgagacagagccaacaggagctgctgcagagggtcaca
ggacacatggatgctgttcaaagctccatcatggcccatgtcgagcatgtcttgctcaca
caacaggaacaggaacaaaggagaatggagagggtgttggcagagggacacgcacgtaac
cagcagcttcaggagcacatggcccagcagctggcacatactctgggtaccacgctctct
agtcgcctggacaaagtgctgcgtgaggagatgaagaaaactgttccacagaccatttct
aagagtctggaacctgtgactggacagatgagcaacactattgcagctaagctgaccgca
gtagagggaacactaaaggaaaatgtcatcaaagtagtcaagtctaagaatataacggat
gccattggcagagctgcagcagaggccatgcagggacccatccaagccgcttacaaagat
gccttccagagcattgtgctccccgtgtttgagcgtggctgccaatcaatgttccagcag
atcaatgacagctttaaacagggaacccacgagtatattcagcagctggagacacatgcc
aagaacaggaagcagcgtgagcaggaggctcgagaccctgtgattggtcagctacaacag
atgatcgacacattgcagagttcacaagatcagctggccaccactgtggcagccggtgtg
cgctctgaggttcagcatcagcttcatatgatcgtgggaaatctgcaggactcgattctc
acgcaggtgcagcgcattgtgaaaggtgaggtgagcttggccatgaaggagcagcaggcg
gcagtcacctccagcatcatgcaagccatgcgctcagctgccgggacccctgttcccact
gcccatctcgactaccaggcccagcaggccagcatcctgcagctactgcagcagggccag
ctgaacgaggccttccagcaggcactgtctgcagctgatttgaacctggtgctgtacgta
tgtgagaccatcgactcacagcaggtgtttggccagaatccatgcccccttcaccaggct
gtgctgctctcgctcatccagcagctctccaccaacctggcaacacgcactgacctcaag
atcagttatctcgaggatgctgtgatgaacctggaccatggggacccagtcaccagagac
cacatgagtgctgtgttgtcccaggtgcggcagaagctgttacagttcctccagcaggac
ccccacagccccctcagcaagcgtgcccgccgcctcatgatgatgctgcagggcctggtc
agccattag
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integrated database retrieval system
