Astyanax mexicanus (Mexican tetra): 103031520
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Entry
103031520 CDS
T05042
Symbol
cica
Name
(RefSeq) protein capicua homolog isoform X1
KO
K20225
capicua transcriptional repressor
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
amex03000
]
103031520 (cica)
Transcription factors [BR:
amex03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
103031520 (cica)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4819
HMG_box
HMG_box_2
Zf_WRKY19
Motif
Other DBs
NCBI-GeneID:
103031520
NCBI-ProteinID:
XP_049332164
LinkDB
All DBs
Position
3:23009322..23054259
Genome browser
AA seq
2499 aa
AA seq
DB search
MKPFKKLGRRSPPSTRAKGGKRKGAADASPEEEKRDAEEKLKLSPPSPKRQSSSNSDSSL
EEPVRTSRTPEVEGQREGILDVTGECGKVEEHSGSFKSGGAQSDSNSSTASANNSPNPSS
SRKTATFKARVPKKKYTSEHCAGNHGNGSTPSTPPQSNSSTAHNGSGASQGSAAAVHTNS
HSQSNRLAEDSTTGVIHNSVDRAREEGVERDKVSTSSPQRCSSTDTASEHSADVEVVAGH
PDHHSNLQAQAGPTALQDSLPAGLSEALAKGLKNQRVLARIGAKMGEGWPPDRGHESPGV
FHAGVLREVIREQGYVEVQLNGEKSLCKYPFRGTTETVDLILDAPPPGQAPVAIGTRVCV
PFGCGTPGSEGAQQWYREGQVTQVDPHPAVTYPYRVQLREDPADEKERRAAEEEGRGTTA
QGVWVSRQSLRLLVPPWDLELPLSADQGNDSRRVRVREREWEDRDEMEVEQELCHLSMVH
GPVLVRGMLHPGSAPSLPPSSSSSVSSAITSVLNIAPDRDWERSREKELEKERELHRQLE
KERERERVILQQPAPEEDMEVSHFSMAQIREGGLPSVMGSKSLPSQHRPILSKPTDYLSP
HLSVVRGIPAPLGPHLSLIAHPTPSPVLLGLDPNAGAAVITPQLPPLPPSSSRSSLEKTS
TSSSHSASGVGSGSSSSSSRSRTPLTAAQQKYKKGDVVCTPTGIRKKFNGKQWRRLCSRE
GCSKESQRRGYCSRHLSMRTKEMEAGGGVGRDRSGASSTGTLTPDLRLGGRTSSEFDWDE
TSRDSSEASSRGGDSRPRLVLPSLLPQELPRDLSRFDFDECEAANMLVSLGSSRSGTPSF
SPVSNQSPFSPAPSPSPSPLFGFRPANFSPITAPSPLTSRRPRHLSGTKMGTPGSERERH
LSGIMPTFQTNLTFTVPMSPSKRKLDAPLPPLPSAPDYAKSDPQLSDLGLSINAAAFRAV
SPQSQPTTPSSLSFPRPRSATSRPSSSAASTPPPMLVSPTPPSPLPQDPSPRRIPLRDSP
VIVRNPDVPLAKFSDGPLNRRAGARSREYSQPPHLAVGLQAPVPINRATPNGAVLLRNPP
PTLVLVTSAQSLTTVAAGRPAHSSPSPSSVSVSNAKREKRKPGDHADALGGVLPQPVACH
PSPTALLPLILPAESPHPAPRKDIIMGRPGTVWTNVEPRSVPVFPWHSLVPFLETSQSNV
STQPADGQALQSKEPRCGVALVTEGRTGQTSAERGSPSRPPPLVEDPPAEREGGGDSETE
SDADDLFYSGGAQDPPSSTGPVKRRTQSLSALPKDSEKKREKDHIRRPMNAFMIFSKRHR
ALVHQRHPNQDNRTVSKILGEWWYALGPKEKQKYHDLAFQVKEAHFRAHPDWKWCNKDRR
KSLSEGRGTPGTKETRERSVSESTDSQLVSQGVEQKAAGSSWASPGSERRGGPMGGQHPR
PRAFSQSAVHSLERRERERDMEKDGSGSFQTRPTSVSQRRASEDVTSDDERMVICEEDGD
DDVIDDSFPEGSIDLKCKERVTDSDEENDPADETDGKPVVRPISFSPRGLLSNNKDTGSQ
KENTESKRQHNTENGKQNGKLKDGKIGGGGGAAGGGGQVPSQSLQSSITGLSVTPSAEPA
VSQVLGAVRIAPTVVTNVVRPVASTPVPIASKPVEGGVAFGSPAPDGKAKLPIGAGGAAG
SGGVPGGGYFPSSSPKPVGPGGLLTGLVLGGAFPSQPTVQLITPPQPLQASTPSNGAPNN
SALPIPLLHPQFLPTASLTPPSGEKPVTQVQYILPTLPTTAHPNSPSPQHTQQPTSVLAL
PTAPPAHVSLANGLHSGAGPGIRYASVGGVSPGGRVQAQSPVLQNKMLVPMATVRTGSTP
PQPISLVAPPLPVQNGAPPGSKIIQIAPMPVVQTNVQPGGTTHPAGSFPVSVAAATVMAS
GTTPAQTVLLTPSPTRITYVQSTPGVAAPLPLGTTTAVSSPQQAPAPPGPAFLPSPMATL
GFTAIAPAGHTLVHPIVAGQPPLLAPVPPSNCSSQSASASGPTRQLVTTIYPAPSVTLAT
GVVSMATVPQSVASSTSTPTSPSSPHTKISIASAAHSQPQTHAETQCRQEQVTVKTESTK
ATDTETHRDTVLSNTAAQTPPAAGAESSRATSPTSHSNTGSGSAASKLPLVHQKVKSQVK
HVLSYQHGEEKDGKRDGSMDRESNMDGGGRGSSRTERPGREKGSEGISKGLLAENDCKED
HGREAERRDACGLDLPPPPPQTDTPTTKKTKSRPPPLKSTTDPVDKVLSGTYFEERLAEL
PEFKPEDVLPSPNLQSLATSPRAILGSYRKKRRNSTDLDSVDDPSSPRRKSRRLSSCSSE
PNTPKSAAKCEGDIFTFDRTAGETEDILGELDRVPYSSLRRTLDQRRALVMQLFQEHGSF
FPSAQATAAFQARYSDTFPTKVCLQLKIREVRQKIMQTATPGSLEITGPGGVTGGSDSTC
NPGPSNPVSREEGGGAELDDKGPGRDEFKSGMGESQELK
NT seq
7500 nt
NT seq
+upstream
nt +downstream
nt
atgaagcccttcaaaaaactaggcaggcggtcacctccttccacgcgagctaaggggggg
aaaagaaagggggcggccgatgcgagcccagaggaagagaagagagacgcagaggaaaag
ctcaaactttcgcccccctctcccaagagacaaagctcctcaaactcagactcttcactg
gaggaaccagtgagaacaagcaggactccagaagtagagggacaaagagagggaatactg
gatgtaacaggggaatgtgggaaagtagaggagcattctgggagctttaagtcaggtgga
gcacagagtgacagcaacagcagcacagcaagcgccaataacagtcccaacccctcatcc
agccgcaagacagccacctttaaggcccgcgtgcccaagaagaagtatacctctgagcac
tgtgctggaaaccatggcaacggcagcactcccagtactcccccacagagcaacagcagc
acagctcacaatggctctggtgctagtcagggctcggctgctgccgttcacacaaactca
cacagccaaagcaaccggcttgctgaggacagtactacaggggtcattcacaacagtgtg
gacagagcaagagaagaaggggttgagagagacaaggtgagcacttccagtcctcagcgc
tgctcctctacagacacagccagcgaacactccgctgatgttgaagtggtagcaggacat
ccggaccaccactcaaatttacaagcacaggctggtcccacggctctacaagacagtctg
ccagctgggctgtctgaagcgctggccaagggcttaaagaaccagagggtcctggccagg
attggtgcaaaaatgggggaaggatggccacccgatagagggcacgaatctccgggtgtt
ttccatgctggtgtccttcgagaagtcatcagggagcaggggtatgtggaggtgcagctg
aatggtgagaaaagtttatgcaaatacccattccgagggactactgaaacagtggacctg
attctagatgcaccccctccagggcaggcacctgtggccataggaacacgtgtgtgtgtg
ccttttggatgtggcactccgggcagtgagggtgcacaacagtggtacagagaaggccag
gtcactcaggtggacccccaccctgctgtgacttacccataccgtgttcagctgcgggag
gatcctgcagatgagaaggagagaagagcagcagaggaggaaggcaggggtaccaccgct
cagggagtgtgggtttcacggcagagccttcgtctcctggttccaccttgggacttggaa
ctaccactgtctgctgatcaagggaatgatagtcgaagagtgagggtaagagaaagagag
tgggaggacagagacgagatggaagtggaacaagagctgtgccatctcagcatggtgcac
gggccagtgttagtaagagggatgttacaccctggatcggcaccttcattaccaccctct
tcctcttcctctgttagctctgctatcacgtctgttctcaacatagctcccgaccgagac
tgggaacgaagccgagaaaaggagctagagaaagaaagagaactgcacaggcaattagaa
aaagagagagaaagggaaagagttattctacaacaacctgccccagaagaagacatggag
gtcagccatttcagcatggcccaaatcagggagggtggcctcccttcagtcatgggcagc
aaatctctgccctcccagcaccggcccattctctcaaaacctacagactacctcagccct
catctatcggtggtgagaggcattcccgcccccctaggacctcacctgtcccttatagct
catccaaccccctcccctgtactgctaggtctggacccaaatgcaggagctgcagtcatc
actccacagttacctcccttgcctccatcctcttcccgcagttccctggagaagacctct
acttccagctcccacagtgcatcgggggttggctcaggctcctcatcttcttcatcacgt
tcccgcacaccactcacagctgcccagcagaaatacaaaaagggtgatgtggtttgtact
cccacaggcatccgcaagaaatttaatgggaagcagtggcgtcggttgtgctctcgggag
ggctgctccaaagagtcccagcgacgtggctactgctcccgccacctttccatgcgaact
aaggagatggaggcaggaggaggagtgggccgagataggagcggtgccagcagcacaggc
accctcacacctgacctccgcttaggaggtcgtaccagcagtgagtttgactgggacgag
acttcacgggatagtagtgaagccagcagccgtggaggagactcccgccctcgtcttgtc
ttgccttcactcctaccacaagaactgccgcgtgacctgtcacgctttgactttgatgaa
tgtgaggctgcaaacatgctggtatcactgggcagctcacgttcaggcactccttcattt
tcaccagtgtccaatcagtcgccgttctctcctgccccatctccttcaccatcaccactt
tttggatttcgcccagccaatttcagccccataactgccccttcacctcttacctctcgc
cgcccacgtcatcttagtggcactaagatgggcacacctggttcggagagggaacgtcac
ctgtcaggcatcatgcccactttccagaccaacctgaccttcactgtgcccatgagtccc
agcaagcgcaagttggatgctccacttccaccacttcccagtgctcctgactacgctaag
tctgatcctcagctgagcgacctaggactgagcataaatgctgcagccttcagggcggtc
tcccctcaaagccagccgaccaccccctcctctctttcttttcctcgaccaaggagtgca
accagccggccctcgtcttctgctgcgtccacccctccgcctatgttggtttcccccaca
cctccttcacctcttcctcaggaccctagcccacgtcgcattcccctacgggattcacct
gtgatcgtgcgcaaccctgacgttcccctggctaagttcagtgatgggccgctgaaccgg
agagcaggtgcacgttcaagagagtacagtcaaccacctcaccttgctgtcggcctccag
gctccggtgcctattaacagagctaccccaaacggtgccgtcttgctccgcaaccctcct
cccactttagtgctggtgacctcagcccaatcactgaccactgtggccgctggacgtcca
gctcactcaagcccttcccccagcagtgtgtctgtttcaaatgcaaaaagagaaaagaga
aagccaggtgatcatgcagatgcattaggaggtgtgctgccacagcctgtggcatgtcat
ccatctccgactgccctccttcccctcatcctgccagcagagtctccacatcctgcaccc
cgcaaggacatcatcatgggacgacctggcacagtctggaccaatgtggagcctcggtct
gttccagtgtttccctggcattcattggttcctttcctggaaaccagccaatcaaatgta
tccacccaacctgctgatggtcaagcacttcagagcaaagaacctcggtgtggagtagct
cttgtgacagaaggacgtactggccaaacaagcgcagagagggggtcgccctcccgccca
cctcccttggtagaggatcctccagcagagagagaaggaggaggagacagtgagacagag
agtgatgctgatgacctattttactcaggtggagcccaagaccctccttcctccacaggt
ccagtgaagagacggactcagtcactcagcgctctaccaaaagacagtgagaagaagaga
gagaaggaccacatccgtcggccaatgaacgcgttcatgatctttagcaagagacaccgt
gccctagtgcaccagaggcacccaaaccaggacaaccgcacagtcagtaagatcctggga
gagtggtggtatgcactgggtcccaaagaaaagcagaagtaccacgaccttgccttccag
gtgaaggaggctcacttcagggcacaccctgactggaagtggtgtaataaggacaggagg
aagtctctgtctgaaggccggggcactccagggaccaaagagactcgagagcggagtgtt
tctgaaagcacagattcccagttagtgtctcagggggtggagcagaaagcagcaggttca
agttgggcgtcaccagggtctgagcgacgtggagggccaatgggaggccagcacccacgg
ccccgcgccttttcccagagtgcagtgcatagcctggagaggagagaacgagaaagggat
atggagaaggatggatcaggttcatttcagactcgtcccacttctgtctcgcaacgcagg
gcaagtgaggacgtgacgagtgatgacgagcgaatggtcatctgtgaagaagatggagat
gatgatgttattgatgattcttttccagaaggctcaatagatttgaagtgtaaagagaga
gtgacagacagcgatgaagagaatgacccagcagatgagactgacggcaagccagtggtc
cgtcccatttcattctcacctagaggcttattgtctaacaacaaggacacaggaagccag
aaggagaacacagagagcaagagacagcacaacacagagaatggaaagcaaaacggaaaa
ctcaaagacgggaaaataggaggaggtggaggagcagcaggaggaggagggcaggtcccc
tcccagtcactccagtcatccatcactggtctgagtgtcactccttcagctgaaccagca
gtatcacaggtgctgggggctgtccggatagcccccacagtggtgaccaatgtggtacga
cctgtggccagcacaccagttcccatcgccagcaaacctgtagaagggggagttgctttc
ggatctcccgcccccgatgggaaagccaaactgccaattggtgcaggaggagcagcaggc
agtggtggtgttccagggggtgggtactttccgtcctcctcgcccaaacctgttggccca
ggaggcctacttacaggtttagtccttggaggagcctttccaagccaacccactgttcag
ctcattaccccaccccaacccctgcaagcctccacccccagtaatggagcccccaacaac
agtgctctgcctattcctctgcttcatcctcagttcctcccaacagcctctctcacccca
cctagtggtgaaaaacctgtgactcaggtgcagtacatcctcccgactctgcccaccaca
gcccacccaaacagcccctccccccagcacacgcagcagccaaccagcgtccttgctctg
cccactgcccctcctgcacatgtatccctggccaatggattgcattcaggggctgggcca
gggataagatatgcctcagtgggaggggtcagccctggaggaagagttcaagcacagtct
ccagtcttacaaaacaagatgctggttcccatggcaacagtgaggacaggatccacacct
ccacagcccatatctctcgtggctccaccccttcctgttcaaaatggggctccaccagga
agtaagatcattcagattgcaccaatgccagtggtccaaaccaatgttcagcctggagga
acaactcatcctgcaggatcctttcctgtctctgtggcagcagcaactgtcatggcttcc
ggcacaacccctgctcaaacagtgcttttgactccatctcctacaaggattacttatgtt
cagtcaaccccgggggttgctgctcctttgccactgggaaccacaacagcagtttcctcc
ccacaacaagccccagctcctccaggaccagcgtttttgccatctcccatggcaactctc
ggcttcactgccatcgcccctgctggtcacacattggtgcatcctatagtggcaggccag
cctccccttttggctccagttccaccctccaactgttcgtctcagtctgcctcggcctca
ggacccactcgccagctagtgaccaccatttaccccgcccccagtgtcaccttggcgacg
ggagtggtttccatggcgaccgtgccacaaagcgtggccagttccacatcaactcctaca
tccccctcgtcacctcatacgaagatatccatagcatcggccgcgcactcgcagccgcag
actcacgcagagacgcagtgcaggcaggagcaggtcaccgtgaagactgaaagcactaaa
gccacagacacagaaacccacagagacacggtgctgtcaaacacagcggctcagacgccc
cctgctgctggggcagaatcatcacgggctaccagtccaacttcacactctaatacaggg
agcggatcagcagcctccaaattacccttggtccatcagaaggtcaaaagtcaagtgaag
cacgtcctctcatatcagcatggggaagagaaagatggaaagagggatggcagtatggac
cgtgagagtaatatggatggtggaggtcggggttcttctcgaacagaaagaccaggaaga
gagaaaggatcagagggaatctctaagggtctgctcgctgaaaacgactgtaaggaggac
catggcagagaggctgaaaggagggatgcatgtgggctggatctgcctccaccaccacca
caaactgacactcctacaaccaagaagaccaagtcccgccccccgccactcaagagcacc
actgatcccgtagacaaagttctctctggaacctattttgaggagcgtctagctgagctg
ccggagttcaagcctgaggacgtgctgccttcacccaacctgcagagtctagccacctct
cccagagccatactgggcagctaccgtaagaagaggaggaactccacagatctggactct
gttgatgaccccagttctccgaggagaaagagccgtcgcttgtccagctgcagctcagaa
cccaacactcccaagagtgctgccaaatgtgaaggagacatattcacctttgacagaaca
gcaggagaaacagaggacattttaggggaactggaccgtgtgccatattcctccctgcgc
cgcacactggatcagcgccgggccctcgtcatgcagctctttcaggagcacgggtccttc
tttccctcagctcaggccacggctgctttccaggcccgctactcagacacgttccccacc
aaagtgtgtctgcagctgaagattcgtgaagtgaggcagaagatcatgcagacagccaca
cccggcagtctggagatcacagggcctggaggagttactggaggatcagactccacctgt
aaccccggaccctctaatcctgtgagcagggaggaaggaggaggagcagaactggatgat
aaaggcccgggacgagatgagtttaaaagcggcatgggcgaatcgcaggagctgaaatga
DBGET
integrated database retrieval system
