Astyanax mexicanus (Mexican tetra): 103032125
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Entry
103032125 CDS
T05042
Symbol
prdm1b
Name
(RefSeq) PR domain zinc finger protein 1 isoform X3
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
amex03000
]
103032125 (prdm1b)
Transcription factors [BR:
amex03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
103032125 (prdm1b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
zf-C2H2_4
SET
zf-C2H2_6
zf-C2H2_jaz
zf-met
zf-C2H2_11
C2CH-3rd_BIRD-IDD
B129_C2H2-zf
zf-MYST
Motif
Other DBs
NCBI-GeneID:
103032125
NCBI-ProteinID:
XP_007245647
UniProt:
A0A8B9R8F0
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Position
19:complement(3541848..3565205)
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AA seq
625 aa
AA seq
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MAEIYSGGQLHRFIDGYDVQRSNWMRYVNPAHSMAEQNLVACQNGCDIFFYTFRPVERDQ
ELLVWYSSEFSERLCGNTHPQLDSLKTKRLGGNVMEADLQKHYLPQWTCCPKRGPSPHLP
KSQDEAKKEEKVAEEAEEKVDVEAIERDTPPDTPDQHIMDFSKKVQSEITRENISRAELS
PQNFPGLHQDLPLHLHGLYGYKDNPTSYPPPLPFPRPLQPPYQLLPPYNPHYSRMLLPPY
TPPFPPMLPPRGPVRYNGFMGNDNLSFLPMTQPDLLPVSLPYPTSHGGLKERLPNTSPPQ
GAPATPELSPLSKHSSSSSPEPLHLLQPPQSMCEEAINLSLASTPKSSSSPLSSSSLSSS
SLSSSSSSRHGPGYKSLPYPLKKQNGKIKYECNVCFKTFGQLSNLKVHLRVHNGERPFQC
QLCKKSFTQLAHLQKHHLVHTGEKPHECQVCHKRFSSTSNLKTHLRLHSGEKPYQCKLCG
TKFTQYIHLKLHRRMHGSACEQPHRCSLCCQAFLHLFSLELHRRSGCCPAAAARPQSPEL
LRTAELLEHFDSSTEAHGLAESAPDAEVDAALERWLARSLVVSQKDERSDSRVYTNLSPK
GQQQERASVVQFCTPPRPSVKAEEE
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atggccgagatttattccggtggtcagcttcaccgcttcatagacggctatgatgtgcag
cgcagcaactggatgcgctacgttaacccggcccactccatggccgagcagaacctggtg
gcctgccagaacggctgcgacatcttcttctacaccttccggcccgtggagcgggaccag
gagctgctggtgtggtacagctctgagttctccgagaggctgtgtggaaacacacacccg
cagctggacagcctgaagacaaaacgtctgggcggcaacgtgatggaagctgacctccag
aagcactacctacctcagtggacctgctgcccaaaacgaggaccaagccctcacttgccc
aagagccaggacgaggccaagaaggaagaaaaagttgcggaagaggcggaagagaaggtt
gacgttgaggcaattgagagggatactcctccagacacacctgaccagcacatcatggac
tttagtaagaaagtccagtcggagatcacccgggagaacatttcccgtgctgaactgagc
cctcagaacttcccaggactgcaccaagatcttccactgcatcttcacggcctctacggc
tacaaagacaaccccacatcctaccctcctcctctgccctttcccagacctctgcagccc
ccctatcagcttttacctccctacaacccccattactctcgcatgctcttgcctccatac
actcctccattccctccaatgctgccccccagaggaccagtcagatacaatggttttatg
ggcaacgacaacttgtcctttctaccaatgacccagccagatcttctgcctgtttccctt
ccctaccctacatctcacggtggcttaaaggagagacttccaaacacctcccctccccaa
ggagccccagccactcctgaactttctcccctgtccaagcactcctcttcttcctctcca
gagccactgcatcttcttcagccgccccaatcgatgtgcgaagaggccatcaacctcagc
ctggcctccacacccaagtcatcttcctcgccattgtcatcatcgtcattgtcatcatcg
tcattgtcatcatcatcttcctcacggcatggacctgggtacaagtctctcccatacccg
ttgaagaaacagaacgggaagatcaagtacgagtgcaacgtctgcttcaaaaccttcggc
cagctttccaacctgaaggtgcacctgagggtacacaatggagagaggcctttccagtgc
cagctgtgcaaaaagagcttcactcagcttgctcacctgcagaagcatcatcttgtccac
actggagagaaacctcatgagtgtcaggtgtgccacaagcgcttcagcagcaccagcaac
ctgaagacgcacctgcggctgcactcaggagaaaagccctaccagtgcaagctctgcggc
accaaattcactcagtacatccacctgaagcttcaccgccgcatgcacgggtcggcgtgc
gaacagccccaccgctgctcgctctgctgccaggccttcctgcacctcttcagcctggag
cttcaccgccgctccggctgctgcccggccgccgccgcccggccgcagagccccgagctg
ctccggacggccgagctgctggagcacttcgactccagcaccgaggcgcacggcctggcc
gagagcgcgccggacgctgaggtggacgcggcgctggagaggtggctggccaggagcctg
gtggtcagtcagaaagacgagcggtcagacagccgggtctataccaacctgtcccccaag
gggcagcagcaggagagggccagcgtggtgcagttctgcaccccaccacgaccttccgtg
aaggcggaggaagagtag
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