Astyanax mexicanus (Mexican tetra): 103032400
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Entry
103032400 CDS
T05042
Symbol
cdkal1
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
amex03016
]
103032400 (cdkal1)
Enzymes [BR:
amex01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
103032400 (cdkal1)
Transfer RNA biogenesis [BR:
amex03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
103032400 (cdkal1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
Motif
Other DBs
NCBI-GeneID:
103032400
NCBI-ProteinID:
XP_022529489
Ensembl:
ENSAMXG00000016721
LinkDB
All DBs
Position
6:27311388..27783677
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AA seq
564 aa
AA seq
DB search
MPSSCDPFVDDIEDIASSHDPTAHQRQFSRQSVVPRVRKRKEHLPGEELQADSVIPGTQK
VWVRTWGCSHNNSDGEYMAGQLAAGGYKMTDNPSDADVWVLNSCTVKSPAEDHFRNSIKK
AQEQNKKVVVAGCVPQAQPRMDYLKGLSIIGVQQIDRVVEVVDEAVKGHSVRLLGQKKDN
GRRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVERARQS
FQEGVCEIWLTSEDTGAYGRDIGTDLPSLLWELVKEIPEGCMLRLGMTNPPYILEHLEEM
AKILNHPRVYGFLHVPVQSASDSVLMDMKREYCCDDFRRVVDFLKDRVPGITIATDIICG
FPGETDEDFQETMELVKKYRFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTKELSALFH
SYNPYHHKIGERQHVLVTEESFDAQYYVAHNKFYEQVLVPKNPGFKGKMIEVDIYESGKH
FMRGRPVVDAKVVTPSITQPLQRGEVSGLSQELKDSCQNGFHASPDSTLKISRSWSLDSE
GLKLLSVGCALLAVIGFFIFEKLY
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgccttcttcgtgtgaccccttcgttgatgatattgaggacatagcatccagccatgac
ccaaccgcccaccagcgtcagttctccaggcagagcgttgttccccgggtacggaagcga
aaggagcatctacctggtgaagagctgcaggcggacagtgtgatcccgggtacacaaaag
gtgtgggtgaggacatggggctgctcacacaataactcagatggagagtacatggctgga
cagctggcagcaggcggctacaaaatgacagataacccgagtgatgctgatgtgtgggtg
ctgaacagctgcactgtgaagagtccagcagaagatcacttcagaaactccatcaagaag
gctcaggagcagaataagaaggtggtggtggcaggttgtgttcctcaggctcagcccagg
atggactacctcaaaggcctgagcattattggggttcagcagattgatcgagtcgtggag
gtggtggatgaagcagtcaaaggtcactccgtccgtctgctgggtcagaagaaggataat
ggcaggcgactggggggggctcgattggatttgccgaagattaggaagaaccctctcata
gaaatcatttctatcaatacaggctgtttgaatgcttgcacatactgcaaaaccaagcat
gccagaggagacctggccagctatcccattgaggaacttgtggagagagccagacagtcc
ttccaggagggagtgtgtgagatctggctgaccagcgaggacactggtgcgtacggcaga
gacatcgggacagatttgccgtctcttctttgggagctggtgaaggagattccggagggc
tgcatgttgagactgggaatgaccaatccgccctacatcctggagcacctggaagaaatg
gctaaaatcctgaaccatccacgagtctacggcttcctgcatgtccccgtccagtcagcg
tctgacagcgtgttaatggatatgaagagggagtactgctgtgatgacttcaggcgtgtg
gtggacttcttaaaggacagagtgccgggcatcactattgccactgacataatctgcggc
tttcctggagagacggatgaggatttccaggagacaatggagctggtgaagaagtatcga
tttcccagcctcttcatcaaccagttctacccgcgacctggcacccctgcagccaagatg
gaacaggtcccggcccaagtgaaaaagcaaagaaccaaagagctatctgcactgtttcac
tcctacaatccttatcaccataagattggtgaaagacagcatgtgttggtcacggaggag
tcattcgatgcacagtactacgtcgctcacaacaaattctatgaacaggtcctggttccc
aagaatcctggttttaaagggaagatgatcgaggtggacatctacgagtccgggaagcac
ttcatgcggggtcgccctgtggtggatgctaaagtcgtcacaccctccatcacccaaccc
ctgcagagaggggaagtgtctggtctttctcaggaattaaaggattcatgtcagaatggc
ttccatgcctctccggattccactctgaagatcagtcgatcatggagtctggatagtgaa
ggactgaagctgctctcagtgggctgtgctctcctggctgttatagggtttttcatattc
gaaaaactttactga
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