Astyanax mexicanus (Mexican tetra): 103032556
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Entry
103032556 CDS
T05042
Symbol
cpsf4
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103032556 (cpsf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amex03021
]
103032556 (cpsf4)
03019 Messenger RNA biogenesis [BR:
amex03019
]
103032556 (cpsf4)
Transcription machinery [BR:
amex03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103032556 (cpsf4)
Messenger RNA biogenesis [BR:
amex03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
103032556 (cpsf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_3
zf-CCCH_2
zf-CCHC
zf-CCCH_4
zf-CCHC_3
Nab2-like_zf-CCCH_
zf-C3H1
Motif
Other DBs
NCBI-GeneID:
103032556
NCBI-ProteinID:
XP_007247890
Ensembl:
ENSAMXG00000031647
UniProt:
A0A8B9RGA1
A0A3B1K266
LinkDB
All DBs
Position
3:54227954..54234157
Genome browser
AA seq
270 aa
AA seq
DB search
MQELIANVDHLKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFMKAACLKGGMCPFRHI
SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK
IKDCPWYDRGFCKHGPDCRHRHTRRVICVNYLVGFCPEGKGCKFMHPRFELPMGTTEQPP
LPQQSQTQQKQNMPNMNRSSLSLIQLTNSNNNPNFHQKMPYMHGPSQNQNHMGGSRGPRP
LDQVTCYKCGEKGHYANKCTKGHLAFLSGQ
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgcaggaattaatcgccaacgttgatcacctcaagtttgatctggagatcgctgtggag
cagcagctcggcgctcagcccttaccgtttccagggatggacaagtccggtgccgctgtg
tgtgaatttttcatgaaagctgcttgtctgaaaggtggaatgtgtccttttcggcacatc
agtggagaaaagacagttgtgtgtaaacactggctgcgaggtttatgcaagaaaggggac
cagtgtgaatttttacatgagtatgacatgacgaagatgccagagtgctatttctactcc
aaatttggtgagtgcagtaataaagaatgccccttcttgcacattgacccagaatctaag
attaaagactgtccatggtatgatcggggattctgcaaacatggtccggattgtcgacac
agacacacaagaagggtcatctgtgtcaattacctagtaggcttttgtcctgagggcaaa
gggtgcaaatttatgcaccctcgttttgagctgcctatgggtacgactgagcagccacca
ctacctcaacagtctcagactcagcagaagcagaacatgccgaatatgaacagatcatcg
ttatcactcatccagttaaccaactccaacaacaaccccaatttccatcaaaaaatgcct
tacatgcatgggccatcacagaatcagaaccacatgggtggctcccgcggccctcgacct
ctggaccaagttacatgttacaagtgtggggagaaggggcattatgccaacaaatgcaca
aaaggacacctggcatttctcagtggacagtag
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integrated database retrieval system
