Astyanax mexicanus (Mexican tetra): 103032740
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Entry
103032740 CDS
T05042
Symbol
snrnp40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
KO
K12857
Prp8 binding protein
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103032740 (snrnp40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
amex03041
]
103032740 (snrnp40)
Spliceosome [BR:
amex03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
103032740 (snrnp40)
Complex C
U5 SnRNP specific factors
103032740 (snrnp40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WDR55
EIF3I
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_WDR75_2nd
eIF2A
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
Beta-prop_RIG_1st
Cytochrom_D1
Beta-prop_IFT140_2nd
WD40_like
WDR54
Beta-prop_LRRK2
Motif
Other DBs
NCBI-GeneID:
103032740
NCBI-ProteinID:
XP_007245731
Ensembl:
ENSAMXG00000020599
UniProt:
A0A8B9L480
W5LN00
LinkDB
All DBs
Position
3:50284815..50292962
Genome browser
AA seq
347 aa
AA seq
DB search
MIEPKKRGADMALVPAAVKRPRSELVAAAQNQQIATMGPPRSSSLQAPIMLLSGHEGEVY
CCKFHPNGAMLASAGYDRLILLWSVYGDCENFATLKGHSGAVMELHYNTDGSLLYSASTD
KTVCVWDSETGERVKRLKGHTSFVNSCFPARRGPQLACTGSDDGTVKLWDIRKKASVHTF
QNTYQVLSVTFNDTSDQIISGGIDNDIKVWDLRQNKLIYSMQGHGDSVTGLSLSSEGSYL
LSNSMDNSVRVWDIRPFAPKERCVKIFQGNVHNFEKNLLRCSWSSDGSKIAAGSADRFVY
VWDTTSRRILYKLPGHAGSVNEVAFHPEEPIVLSGSSDKRLYMGEIQ
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atgatcgagccgaaaaagcgcggcgcggacatggcgctggttcccgccgccgtgaagaga
ccgaggagcgagctggtggccgcagcgcagaaccagcagatcgccaccatgggtcctcct
cgcagctccagtttacaggctcctataatgttgctgtctggacatgaaggagaagtctac
tgctgcaagtttcatcccaatggagccatgctagcttctgcaggatatgaccgcctcatc
ttgttatggagtgtgtacggagactgtgagaactttgccacattgaaaggccacagtgga
gctgtgatggagcttcactacaatacagatggaagcttgctctactcagccagtacggat
aagactgtgtgtgtgtgggacagtgagactggtgagcgtgtaaagcgtctaaaaggccac
acatcctttgttaactcttgctttcctgcacgccgcggtccacagctagcctgcactggc
agtgacgacggaactgtgaagctgtgggacatcagaaagaaggcgtctgttcataccttc
cagaacacctaccaggttctgagtgtgaccttcaatgacaccagtgatcagatcatttct
ggaggcatcgacaatgacattaaggtgtgggatttgaggcagaataagctgatttacagc
atgcagggacatggagactctgtaacaggactcagtctcagttcagagggatcctaccta
ctgtccaactccatggacaacagtgtgcgtgtatgggatatccgtccattcgccccgaag
gagagatgtgtgaagatcttccagggcaatgtccacaactttgagaagaatcttctgcgg
tgctcgtggtcatcagatgggagtaagatagcggcgggctctgctgacaggtttgtttat
gtgtgggacacaacctctcgtagaattctctataagctccctggtcacgcgggatcagtt
aatgaagtggccttccatccagaagaaccgattgttctgtctggatccagtgacaagcgg
ctgtatatgggggagatccagtaa
DBGET
integrated database retrieval system
