Astyanax mexicanus (Mexican tetra): 103032914
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Entry
103032914 CDS
T05042
Symbol
rorca
Name
(RefSeq) RAR-related orphan receptor C a
KO
K08533
RAR-related orphan receptor beta
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
amex03000
]
103032914 (rorca)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
amex03310
]
103032914 (rorca)
Transcription factors [BR:
amex03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
103032914 (rorca)
Nuclear receptors [BR:
amex03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
103032914 (rorca)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
103032914
NCBI-ProteinID:
XP_015457206
Ensembl:
ENSAMXG00000009363
UniProt:
A0A8B9HPP4
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Position
12:complement(7489438..7526087)
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AA seq
483 aa
AA seq
DB search
MRAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAMYSCSRQRNCLIDRTNRN
RCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQKHQQSQERTSGPGGITLPSRVN
DDIGENGNGGHGRAYSRSSSSTALSDLDDIGALPDSLLFDLPLTPEDAGEYCSLDLLGGS
RGSSSSSQSSPEQSVQEFSDTPHIKHEYQLLHETGMYTHSPLNGQPEGCSLLEIERITQS
VVKSHVETSQYSPEELKRLTWNLYTSEETRTYQNKPSEVMWQQCAVHLTNAIQYVVEFAK
RITGFMDLCQNDQIILLKAGCLDVLLIRMCRAYNPLNHTLLFDGKFASPQLFKALGCDDL
VNAVYELAKTMSRLQMTEEEMALFSAAVLLSPDRPWLSDSQRVQRLQEKVYLALQRCLNR
GGTSEEKLTKMVAKLPIMKSICNLHIDKLEFFRLLHPETAYSFPPLYREVFGSEITFPDS
TEG
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgagagctcaaatcgaggtgatcccgtgtaagatctgtggagataagtcatcaggtatt
cactacggcgtgatcacatgtgaagggtgcaagggtttcttccgccgcagtcagcagaac
aatgccatgtactcctgctctcggcagaggaactgcctgatcgaccgcaccaaccgcaac
cgctgccagcactgccgcctgcagaaatgcctggccctcggcatgagccgtgatgctgtg
aaattcggccgcatgtctaaaaagcagcgggacagcctctacgcagaggttcagaagcac
cagcagtcccaggagaggaccagcggccccgggggcattactttgccctcccgcgtaaac
gatgacatcggagagaacggtaacggcgggcacggccgggcgtacagccgcagcagctcc
agcacggccctcagcgacctggacgacatcggagcgctgccagacagcctgctgttcgac
ctgccgctgacgccggaggacgccggcgagtactgcagcctggacctgctggggggcagc
aggggcagcagctcctcctcccagagttccccagaacagagcgtgcaggagttcagcgac
acgccccacatcaaacacgagtaccagctcctccacgagaccggcatgtacacacactca
ccgctcaacggccagcctgagggatgctccctgctggagatagagcgcatcactcagagt
gtggtgaaatcccacgtggagacgagtcagtacagtcctgaggagctaaaacggctcacc
tggaacctctacacaagcgaggagacccgcacctaccagaacaagccgtcagaggtgatg
tggcagcagtgtgcagttcacctcaccaacgccatccagtacgtggtggagttcgccaag
cgcatcaccggctttatggacctgtgtcaaaacgaccagatcatcctcctcaaagcaggc
tgtttagacgtgttgctgatccggatgtgtcgagcctataaccccctcaatcacacgctg
ctgtttgatgggaagtttgccagcccacagctcttcaaagcactgggctgtgatgacctg
gtgaatgctgtatatgaactggccaagaccatgagccgtctgcagatgaccgaggaggag
atggccctcttcagcgccgctgtgctcctgtctccagaccggccgtggctgagtgatagc
cagcgggtgcagaggctgcaggagaaagtgtacctggctctgcagcgctgcctcaacaga
ggaggaacctccgaggagaaactgaccaagatggtggctaaactgcccatcatgaagtct
atctgtaacctccacatcgacaagctggagttcttccgcctgctccaccccgaaacggcg
tacagcttccccccgctctacagggaagtgttcggcagcgagatcaccttccccgactcc
accgagggctag
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