Astyanax mexicanus (Mexican tetra): 103033004
Help
Entry
103033004 CDS
T05042
Symbol
afdna
Name
(RefSeq) afadin isoform X9
KO
K05702
afadin
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex04517
IgSF CAM signaling
amex04520
Adherens junction
amex04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
103033004 (afdna)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
103033004 (afdna)
04530 Tight junction
103033004 (afdna)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RA
DIL
PDZ
FHA
RA_2
PDZ_6
PDZ_2
RA_3
RASSF8-10_RA
Yop-YscD_cpl
Motif
Other DBs
NCBI-GeneID:
103033004
NCBI-ProteinID:
XP_007255410
Ensembl:
ENSAMXG00000017862
LinkDB
All DBs
Position
1:complement(79939142..80075225)
Genome browser
AA seq
1881 aa
AA seq
DB search
MSGSREEERRKLADIINHWNANRLDLFEISQPTEELEFHGVMRFYFQDRVAGNFATKCIR
VSSTATTQDVIETLAEKFRPDMRMLSSPKYSLYEVHVSGEERKLDLDEKPLVVQLNWNKD
DREGRFVLKNENDIIPKKAQSNGPEKEKEGVIQNFKRTLSKKEKKKEKKKDKEAFARIPD
GDDHALNREDGDSRLAAEVYKDMPETSFTRTISNPEVVMKRRRQQKLEKRMQEFRSGDGR
PDSGGTLRIYADSLKPNIPYKTILLSTTDTADFAVAEALEKYGLEKENPREYCIARVVHS
DDKPVKETILDDTECPLQIFRDWTSDKEALVFQLKKRPPDYIAKKGRKSDERMGPLHGSL
PPEKLPYLVELSPGRGNHYAYYGYRQHEDGSDSRDKPKLYRLQHSLTEVGSDRSEDGNIQ
LFGPGILPHHCNLMHADGLVMVTPVSMDAETFVDGQRIQDTTVLRSGMTLQFGAAHVFKF
VDPSYDHVMAKRDPGPMVKGRNKSGSVPETTFDLHGDVHSGTALPTSKSSGKLDMDRSGN
GSERGMVKPMIRGEQQDFSKHDGRPHDGPELTLPASIEFRENSEDAFLSAIINYTNSSTV
HFKLSPTYVLYMTCRYVMSSQYRPDISPSERTHKVIAIVNKMVSMMEGVIQEIADGDQKQ
KNIAGALAFWMANASELLNFIKQDKDLSRITLDAQDVLAHLVQMAFKYLVHCLQSDLNNY
MPAFLDDPEEQNPQRPKIEDVLHTLTGAMSLLRRCRVNAALTIQLFSQLFHFINMWLFNK
LVTESDSGLCSHYWGAILRQQLSHIEAWAEKQGLELAADCHLSRIVQATTLLTMDKYSVQ
DVQNINNTCFKLNSLQLNALMSNYHCAPDEPYIPHELIDHVVAVAENTADELARSDGREV
QLEEDPDLQLPFLLPEDGYSCDVVRNIPNGFQEFLEPLCQRGFCRLTPHPRSPGTWTVYF
EGADCDSHFSTDNSELPMRKEPEVVTVTLKKHNGMGLSIVAAKGAGQEKLGIYIKSVVKG
GAADMDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTGSVVTLEVAKQGAIYHGLATLL
NQPSPMMPRASDRGRGDKGKARPKSEGFELYNNSVQNGSPESPQGAWDTYPEPKREDRLL
KNRADHRSSPNVANQAQSPGGKSAYPGAPGKITSVSTGNLCPDEEPSPPRPEAYPIPTQT
YPREYFTFPASKPQDRMGPGSGQPWQSNEPEPLPPMDDHHHNSMAMQRVARSQEELCDPP
VGYPADRLPERLRQEDLRLLQQQREAEYQRDRVAGEHWNHQVSSSVESSTSSQEHLNYSS
SSSGTKPQSNHKSGAGRWKTPIGPHSGPVGVSQPSRTDLPPPPPPPPPALYDYEPQTELP
LPPPPAISQQQQQAMADRKKREEQQRWYEKEKARLEEERERKRREQERKLGQIRNPMGPP
PALHNNQHGPTLPPAPQHQQMPPPQPPVSMQLPQPYLPQPQQPPQTQPPRPEKLSTLPRA
PLPPSQPLDTVIRDLQPQQQPRTIERRDLQYITISKEELSASDSLSPDPWKRDAREKLEK
QQQMHIVDLLDKEIQELQAKPERTAEESDRLRKLMLEWQFQKRLQESKQSEEDEEEEDDE
DVDTMLIMQRLEAEKRARQQTAVPAISVLDLLQDEERRRKQQLEEIRKREAEERAKQEEE
RRWREEERARRETDEKRRQEEEYYTRLEAERRRQHDEAERKLLTPDEPGLYRPPLPRDYQ
PPLPAPATNNNSISNNSNPPPTPPQRNTSYLKTQVVSPDTLYTAKFVSYNDEEEEDAGVA
GFNSYTGNTTTGVVGSGEVYKDPREKSTGKGGQEQENSIGGAPENLTFKERQRLFSQGKE
VSNKVKASRKLMELENELNTK
NT seq
5646 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggagccgagaggaggagcggcgcaaactggccgacatcatcaaccactggaac
gccaaccggctcgacctgttcgagatcagccagccgaccgaggagttggagttccatggc
gtgatgaggttctacttccaggacagggtggcagggaattttgccaccaagtgcatccga
gtgtccagcacggccaccacacaggacgtgatcgagaccctggctgagaaattccggccc
gacatgaggatgctctcatcacccaaatactctctgtacgaggtccacgtcagcggggaa
gaacggaagctggacctggacgagaagcccctggtggtgcagctcaactggaacaaagac
gacagagagggccgcttcgtcctcaagaacgaaaatgacatcattccaaagaaagcacag
agcaatggccctgagaaagagaaagagggggtgatccagaacttcaaaagaacgctctcc
aagaaagagaaaaagaaggagaaaaagaaagataaagaggcctttgcacggattcctgat
ggcgatgaccatgcactgaacagagaggatggagactcgagactggcagcagaagtgtat
aaagacatgcctgagaccagcttcactcgcaccatctccaaccctgaggtcgtcatgaag
agaagacggcagcagaagctggagaagagaatgcaagagttccgcagtggtgatggtcga
ccagactcaggggggacactgaggatctatgcagacagtctgaagcccaacatcccctat
aagaccatcctgctgtccactactgacacagctgactttgcagtggccgaggctctagag
aaatatggcttggagaaggagaaccccagagagtactgcattgcacgggttgtccactct
gatgataagcctgtgaaggagaccatactggatgatacagagtgtccactgcagatcttc
agagactggaccagtgataaagaggctttagtgttccagctgaagaagcgacccccggac
tacatcgctaaaaagggccgcaagtcagacgaaaggatggggccactgcatggatctctg
cctccagagaaactgccttatctagtagagctgagtccagggcgggggaatcactatgcc
tactacggctatcggcaacatgaagatggttcagactccagggataaacccaaactatac
cggctgcagcacagcctgactgaggtcggatcagaccgaagcgaagacggcaacatccag
ctgtttggaccaggcatcctgcctcaccactgtaacctgatgcatgcggacggtctggta
atggtcactcctgtcagcatggatgccgagacctttgtggatggacagcggattcaggac
accacagtgctgcgcagcggcatgaccctgcagttcggtgctgctcacgtctttaagttt
gtggaccccagctatgaccatgtcatggccaagcgagacccagggcccatggtgaagggc
aggaacaagtcagggagtgtcccagagacgacctttgacctgcacggggacgttcacagt
ggcaccgctctgcccacaagcaagagctcagggaagctggacatggatcgttctggtaac
ggcagcgagagaggcatggtgaagcccatgattcgtggagagcagcaggatttcagcaag
cacgatggaagacctcatgatggccctgagcttacactaccagccagcatcgagttcagg
gagaactccgaagacgccttcctgtcagccatcatcaactacaccaacagctccactgtg
cacttcaagctgtcacccacctatgtgctctatatgacctgccgctacgtgatgtccagc
caataccggccagacatcagtccgtcagagcgaacgcacaaagtcatcgccatcgtgaac
aagatggtgagcatgatggaaggagtgattcaggagattgctgatggtgaccagaagcag
aaaaacattgctggggctctggccttctggatggccaatgcctcagagctgctcaacttc
atcaagcaggacaaagacctgagtcgcatcacgctggacgcacaagacgtccttgcacac
ctcgtccagatggccttcaagtacttggtacactgtttgcaatcagatctgaataactac
atgcctgcgttcctagacgaccctgaggagcagaatccacagaggcctaagatagaggat
gtgttgcacactctgactggtgccatgtcgttgctgcggcgttgccgtgtcaacgcagcc
ctcaccatccagctgttctctcagctcttccacttcatcaacatgtggctcttcaacaag
ctggtgactgagtcagactcaggcctgtgctcacactactggggcgccatcctgcgccag
cagctcagtcacatagaggcctgggctgagaagcaagggctggagctggctgcagactgc
cacctcagccgcatagtgcaggcaacgactcttctcactatggacaaatactctgtgcaa
gatgtgcagaacatcaacaacacttgcttcaaactcaactctctgcagctcaatgccctc
atgagcaactatcactgtgccccagatgagccctacatccctcatgagctaattgatcac
gtagtagctgtggcagagaacacagcggatgaactggctcgaagtgatgggcgagaggtc
cagctggaggaggatcctgacctgcagctccccttcctgctgcctgaggacggctactcc
tgcgacgtcgtccgcaacattcccaacggcttccaggagtttctggagccgctctgtcag
agaggcttctgtcgtctgacccctcaccctcgttctccaggcacctggaccgtctacttt
gaaggagcagactgtgacagccacttttccactgacaactcagagctgccaatgaggaag
gaaccagaagttgtgactgtgacactgaagaagcacaatggcatgggcctcagcatcgtg
gcagccaagggtgctggccaggaaaagcttgggatttacatcaagtctgttgtaaagggg
ggagctgcagacatggacggacgtctggctgctggagaccagttactcagtgtggacggg
agaagtctggttggactttctcaggaaagggctgcggagttgatgacacgcacaggctcg
gtggtgacactagaagtggctaagcagggggctatttaccacgggctggccacactgctc
aaccagccctcacccatgatgccccgcgcatcagaccggggccgtggggataagggtaag
gccagaccgaagagtgagggcttcgagctgtacaacaactctgttcagaacgggtctcca
gagagcccccagggggcctgggacacttaccccgaaccaaagagagaggacaggctcctg
aagaaccgggcagaccatcgctctagccccaatgtggccaatcaagctcagagtccaggg
ggaaagtctgcctatcctggagctccaggaaagatcacgtctgtctccacaggcaacctc
tgccctgatgaggagccctctccgccccgtccagaagcatacccaatccccactcagacg
taccctagggaatacttcaccttccctgcctctaaacctcaggacaggatgggccctgga
tccggccagccttggcagagcaatgagccagaaccacttcctcctatggatgaccatcac
cacaacagcatggctatgcagcgggtggcacgctctcaggaggagctgtgtgaccctcca
gtgggataccccgccgaccgcctgcctgagcgtctgagacaggaagacctgcggctcctg
cagcaacagcgtgaggcagagtatcagcgggaccgcgtggctggagagcactggaatcac
caggtgtcgtcctcagtggagtccagcacctccagtcaggagcaccttaactactcatca
tcttcgtctggcaccaagccccagagcaaccacaagagcggtgccggccgctggaagact
cccatagggccccactctggccccgtgggtgtgtcccagccgtcccgcacagacctgccc
cctccccctccacccccgcctccagcgctctatgactatgagccccagactgagctgccc
ctgccacccccgcctgccatctcccagcagcagcagcaggccatggctgaccgcaagaag
cgcgaggagcagcagcgctggtatgaaaaggagaaggctcgactagaagaggagagagag
aggaagaggagggagcaggagaggaagctgggtcaaattcgcaaccccatgggcccaccc
cctgcccttcataacaatcagcatggccccactttgcccccagctccccagcaccagcag
atgcctcctccacagccaccagtgtccatgcagctgccccagccctacctgccccaaccc
cagcagccaccccagacccagccgcccaggccagagaagctttccacccttcctcgtgcc
ccactgccaccttcacagcctctagacacggtgatccgggacctgcagccgcagcagcaa
ccgcgcaccatcgagcggcgcgacctgcagtacattaccatcagcaaagaggagctgtca
gccagtgacagcctctcgccggacccctggaaaagggacgcccgggagaaactggagaag
cagcagcagatgcacatcgtggacctgctggataaggagatccaggagctgcaggccaag
cccgaacgcacagccgaggagagtgaccgcctgcgcaagctcatgctggagtggcaattc
caaaagaggctgcaggagtccaagcagagcgaggaggacgaggaggaggaagacgatgag
gacgtggacaccatgctgatcatgcagaggttggaggctgagaagagagcaaggcagcag
actgctgtcccagcaatctctgttctagacttgctgcaggatgaggagcggcggcggaag
cagcagctagaggagatccgtaagcgtgaagctgaggaacgggctaagcaggaggaggag
aggcgctggagagaagaggagcgggccaggcgagaaaccgacgagaagaggagacaggag
gaggagtactacacccgcctggaggcggagcggcgccggcagcatgacgaggccgagcgc
aagctgctgacgccagatgaacctggtctgtacagacctcctctgccccgggactaccag
cccccccttcccgcacccgccactaacaacaacagcatcagcaacaacagcaaccctcct
ccgaccccgcctcagagaaacacctcctacctcaaaacccaggtcgtctcccccgacacc
ttgtacactgccaagtttgtctcgtacaatgacgaggaggaggaggacgcaggcgtagca
ggatttaattcatacactggaaacacaacaacaggagttgtaggatcaggagaagtttac
aaggacccacgagagaaatcgacgggaaaaggtggtcaagagcaggagaattccataggc
ggtgcgcctgagaacctcacattcaaggagcgccagagactcttctcacagggaaaggaa
gtttcaaacaaagtgaaggcctctcggaagttaatggagctggaaaatgaactcaacaca
aaatag
DBGET
integrated database retrieval system
