Astyanax mexicanus (Mexican tetra): 103033088
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Entry
103033088 CDS
T05042
Symbol
sptbn1
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1 isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex04517
IgSF CAM signaling
amex04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
103033088 (sptbn1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
103033088 (sptbn1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
amex04812
]
103033088 (sptbn1)
Cytoskeleton proteins [BR:
amex04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
103033088 (sptbn1)
Intermediate filaments
Intermediate filament-binding proteins
103033088 (sptbn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
PH_11
PMC2NT
SOS1_NGEF_PH
N36
Motif
Other DBs
NCBI-GeneID:
103033088
NCBI-ProteinID:
XP_007231836
Ensembl:
ENSAMXG00000006713
UniProt:
A0A8B9RF52
LinkDB
All DBs
Position
16:31504400..31629875
Genome browser
AA seq
2347 aa
AA seq
DB search
MTTVAAEFDHMDIQQQYQDTVNNRWDEDWDNENSSARLFERSRIKALADEREAVQKKTFT
KWVNSHLARVSCRITDLYMDLRDGRMLIKLLEVLSGERLPKPTKGRMRIHCLENVDKALQ
FLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDISVETEDNKEKRSAKDALLL
WCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNAFNLA
EQHLGLTKLLDPEDISVDHPDEKSVITYVVTYYHYFSKMKALKVEGKRIGKVLDNAIETE
KMIEKYESLASDLLEWIEQTIIILNNRKFANSLVGVQQQLQAFNTYRTVEKPPKFTEKGN
LEVLLFTIQSKMRANNQKVYMPREGKLISDINKAWERLEKAEHERELALRNELIRQEKLE
QLARRFDRKAAMRETWLSENQRLVSQDNFGFDLQAVEAATKKHEAIETDIAAYEERVQAV
VSVARELEAENYHDIKRITARKDNVLRLWEYLLELLKARRQRLEMNLGLQRVFQEMLYIM
DWMDEMKMLLLSQDYGKHLLGVEDLLQKHALVEADIGIQADRVRNVNSNAQKFAIDDDGY
KPCDPQVIRDRVAHLEFCYQELTQLAAERRARLEESRRLWKFFWEMAEEEGWIREKEQIL
SSDDVGKDLTGAVRLLSQHRALEDEMSGRGGHLQHTVREGLAMADAGHFGETRIRERVAE
VQAQWAALEQLAAVRKARLEEACGLHQFQADADDVDAWTLDALRIVSSGDVGHDEFSTQA
LVKTHKDAAAEVASYRPVIDALHEQSRALPPELAESADVSGRLAGIEERYKEVAELTRLR
KQALQDALALYKMFSEANACEVWIDEKEQWLNSMEIPEKLEDLEVIQHRFESLEPEMNNQ
ASRVAVVNQIARQLMHSGHPSEKDIKAQQDKLNTRWSQFRDLVDQKKESLNSALGVQNYH
LDCNETKSWIREKTKVIESTQELGNDLTGVMALQRKLTGMERDLAAIEAKLGDLKGEAER
LAGEHPEQAKAITGRLAEIDSVWEEMKDTLRNREASLGEASKLQQFLRELDDFQSWLSRT
QTAIASEDMPNTLAEAEKLLAQHEGIKNEINNYEEDYQKMRDMGEMVTQGQTDAQYMFLR
QRLQALDTGWNELHKMWENRQNLLSQSHAYQLFLRDTKQAEAFLNNQEYVLAHTEMPTTL
EGAEAAIKKQEDFMTTMDANEEKINSVVEAGRRLASDGNINTDRIQERAASIDERHKKNR
EAAVELLMRLKDNRDLQKFLQDCQELSLWTNEKMLTAQDMSYDEARNLHSKWLKHQAFMA
ELQSNKEWLDKIEKEGMQLVAEKPETEAIVKEKLSALQKQWQELESTTQTKAQCLFDANK
AELFTQSCADLDKWLGGLEGQIQSDDYGKDLTSVNILLKKQQMLENQVEVRKREVEELQS
QAHVLRQEGKDTDEVDGRREVVEKKFQEMLDPLMKRKNFLMASREIHQFNRDVEDEILWV
EERMPIATSTDHGHNLQTVQLLIKKNQTLQKEIQGHQPRCDDIFERSQSILKEDSPSVEA
IKARLSDLQTLWDLIIQETEKRHERLEEAHKAQQYYFDAAEAEAWMSEQELYMMSEEKAK
DEQSSVTMLKKHQILEQAVEDYAETVHQLSKTSRGLVAANHPESERIGMRQSQVDKLYAG
LKDLSEERRGKLDERFRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFRE
FARDTGNIGQERVDSVNRMADELINAGHTDAATVAEWKDGLNEAWADLLELIDTRTQILA
ASYELHKFYHDAKEILSRILDKHKMLPEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQ
LQEDAVRLQSAYAGDKADDIQRRETEVLDAWRNLLEACEGRRARLLDTGDKFRFFSMVRD
LMLWMEDVIRLIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTACIELGKSLLARKH
YASEEIKDKLLQLTDKRKEMIDKWEDRWEWLRLILEVHQFSRDAGVAEAWLLGQEPYLSS
REMGQSVDDVEKLIKRHEAFEKSAATWEERFSALERLTTMELLEVRRQQEEEERRRKPPT
PEPEEIQEQRDGEQIAQNGLPSDQDSPRDGVDGEIVNGVPERSSKEPSPIPSPTSGRRTK
GSQSSTLPAKGQDSPSAQLEGLLHRKHEWEGHNKKASNRSWHNVYCVINNQEMGFYKDNK
NAGQGIPYHNEIPVSLKDAVCEVAVDYKKKKHVFKLRVTDGNEYLFQAKDDEEMNTWIQA
IQNATTGSSASDKSEITPSNQSTPVSSRAQTLPATVTLTTESSPGKREKDKEKDKEKRFS
LFSKKKQ
NT seq
7044 nt
NT seq
+upstream
nt +downstream
nt
atgacgacagtagccgcagaatttgaccacatggacatccagcagcagtaccaggatact
gtcaacaaccgctgggatgaggactgggacaacgagaacagctccgcccgcctcttcgag
cgctcgcgtatcaaggccttagcagatgagcgtgaggcggtgcagaagaagaccttcacg
aaatgggtcaactcacacctggcccgagtttcctgccgcatcacagacctgtacatggac
ctgcgggatggacgcatgctcatcaagctgctggaggtgctctctggagaaagactgccc
aagcccacaaagggccgcatgaggatccactgcctggagaatgtggacaaagcccttcag
ttcctcaaggagcagagggtccatctggagaacatgggctcccatgacatcgtcgacggg
aatcatcgcctaacgcttggtctcatctggaccatcatcctccgcttccagatccaagac
atcagtgttgagacagaagacaacaaagagaagcgctcagccaaagacgctctgcttctg
tggtgtcagatgaagacagcaggctatccgaatgtcaacatccacaacttcactaccagc
tggcgtgacgggatggccttcaacgctctcattcacaaacacaggccagacctgatcgac
tttgacaagctgaagaagtccaatgctcactacaacctgcagaatgccttcaacctggcc
gagcagcacctgggactgaccaaactgctggaccctgaggatatcagtgtggatcaccct
gatgagaaatcagtcatcacctacgtcgtcacatactaccattacttctccaagatgaag
gcactgaaggtggagggcaagcgtattgggaaggtgctggacaatgccattgaaacagag
aagatgattgagaaatacgagtctctggcctccgacctgctggagtggatcgagcagacc
atcatcatcctcaacaaccgaaagttcgccaattcgctggtcggggttcagcagcagctc
caggcttttaacacctaccgcactgtggagaaaccacccaagtttacagagaaaggcaac
ctggaggtccttctgttcaccattcagagcaagatgagagccaacaaccagaaagtgtat
atgcccagagagggcaaactcatctcagacattaacaaggcatgggagcgcttggagaag
gcggagcacgagcgagagctggctctgaggaatgagctgattcgtcaggagaagctggag
cagctggcgcgccgtttcgaccgcaaggccgccatgagagagacctggctcagcgagaac
cagcggctagtgtcacaggacaactttggcttcgacctgcaggcagtagaggctgccacc
aagaagcacgaggccatcgagacggacatcgctgcgtacgaggagcgagtgcaggccgta
gtgtccgtggcccgcgagctggaggccgagaactaccacgacatcaagcgcatcactgcc
cgcaaagacaacgtcctgcgcctgtgggaatacctgctggagctgctgaaggcccgcaga
cagaggctggagatgaacctgggtctgcagcgtgtcttccaggagatgctctacatcatg
gactggatggacgagatgaagatgctgctgctctctcaggactatgggaagcacttgctg
ggagtggaggatctgcttcagaagcacgctctggtcgaggccgacatcggcatccaggct
gaccgagtccggaacgtcaactccaacgcccagaagtttgctattgacgatgatggctat
aagccctgtgacccgcaggtgatccgggaccgcgtagctcatttggagttctgctatcag
gagctgacccagctggctgcagagcggcgggcgaggctggaggagtcccggcggctgtgg
aagttcttctgggagatggcggaggaggagggctggatcagggagaaggagcagatcctg
tcgtctgacgacgtgggtaaagacctgaccggagccgtgcggctgctgagtcagcaccgg
gccctggaggatgagatgagcggacggggcgggcacctgcagcacaccgtgcgggagggt
ctggccatggctgatgccgggcacttcggcgagacccgtatccgagagcgcgtggcggag
gttcaggcccagtgggcggcgctggagcaactggctgctgtccggaaagcccggctggag
gaagcctgcgggctgcaccagttccaggctgacgcggatgacgtggacgcctggacgttg
gatgctctgcgcattgtctccagcggcgacgtgggccacgatgagttctccacgcaagcc
ctggtcaagacacacaaggacgccgcagccgaggttgccagttaccgccccgtgatcgac
gccttgcacgagcaaagccgggcgcttcctccagagctggcggagtcggccgatgttagc
gggcgtctggcgggtatcgaggagcgctacaaggaggtggctgagctgacccggctgagg
aagcaggccctgcaggacgcactggctctttataaaatgttcagcgaggctaacgcctgc
gaggtgtggattgacgagaaggagcagtggctcaacagtatggaaatccctgaaaagctg
gaggacctggaagtcattcagcacaggtttgagagtctggagcctgagatgaataaccaa
gcgtctcgcgtcgccgtggtcaaccagatcgccaggcagctgatgcacagtggacatcca
agcgaaaaggatatcaaagcccagcaggacaaactcaacacaagatggagtcagttccga
gacctggtggaccagaagaaagagtctctgaactctgctttgggtgtgcagaactaccac
ctggactgcaacgagaccaagtcgtggatccgcgagaagaccaaagtcatcgagtccaca
caggagctgggtaacgatctgacgggcgtgatggccctgcagcgcaagctgactggcatg
gagcgtgacctggccgccatcgaggccaagctgggtgacctgaagggtgaggcggagcgg
ctggcgggtgaacacccagagcaggcaaaggctatcactggccgtctggccgagatcgac
tcggtgtgggaggagatgaaggacacactgcgtaaccgcgaggcctccctgggtgaagcc
agcaaactgcagcagttcctgcgcgagctggatgacttccagtcctggttgtcccgcaca
cagacggccatcgcctccgaagacatgcccaacacgctggccgaggctgagaagctgctg
gcccagcacgagggcatcaagaacgaaatcaacaactacgaggaggactaccagaagatg
cgggacatgggagagatggtgacccagggccagactgacgctcagtacatgttcctgagg
caaaggctgcaggcgctggacaccggctggaacgagctgcacaagatgtgggagaacagg
cagaacctcctgtcccagtcccacgcctaccagctcttcctcagagacaccaagcaggct
gaggccttcctcaataatcaggagtatgtgctggctcacactgagatgcccaccactctc
gagggagcagaggctgccataaagaagcaggaggacttcatgaccacaatggacgccaat
gaggagaagatcaacagtgtggtggaagctggacgcagattggccagtgatggaaacatc
aacaccgatcgaatccaggagagagcagcttctattgatgaaagacataagaagaaccgt
gaggcggcagtggagctgctgatgaggctgaaggataacagagacctgcagaagttcctg
caggactgccaggagctgtccctgtggaccaacgagaagatgctgaccgcacaggacatg
tcgtatgatgaagccaggaacctacacagcaagtggctcaaacaccaggccttcatggct
gaattacagtccaacaaggagtggctggacaagattgaaaaggaagggatgcagctggtg
gctgagaagcctgagacagaggctatagtgaaggagaagctgtctgcgctacagaagcag
tggcaggagctggagtccaccacacagactaaagcccagtgcctgttcgatgccaacaag
gctgagcttttcacacagagctgtgctgacctcgacaagtggctgggaggtctggagggg
cagatccagtcagatgattatggcaaggatttgaccagcgtcaacatcctgctgaagaag
cagcagatgctggagaaccaggtggaggtgcgtaagagggaggtggaggagctgcagtcg
caggctcacgtactgcggcaggagggaaaggacacggacgaggttgacggacggcgagag
gtggtggagaaaaagttccaggagatgctggatcctctgatgaagaggaagaacttcctc
atggcctccagagagatccaccagttcaatcgtgatgtggaggatgagattctctgggtt
gaggagagaatgccaattgctacttcaacagaccatggccacaacttacagactgttcag
cttctaattaagaagaaccagaccttacagaaggagatccagggtcatcagccacgctgt
gatgacatcttcgagcgcagtcagagcatcctgaaggaggacagccccagtgtggaggcc
atcaaggcgaggctgtccgacctgcagaccctctgggacctcatcatccaggagactgag
aagaggcatgagcgtctggaggaggcccacaaggcccagcaatactatttcgatgctgcc
gaggctgaggcctggatgagcgagcaggagctctacatgatgtctgaggagaaagccaag
gatgagcagagctcagtgaccatgctgaagaagcatcagatcctggagcaggcagtggag
gactacgctgagaccgtccaccagctctccaagaccagccgtggcctggtggccgccaat
cacccagagagtgagagaatagggatgcgccagtctcaggtggataagctatacgcagga
ctgaaggacctgtcggaggagaggagaggaaaactggacgaacggttccgtctcttccag
ctgaaccgggaggtggatgatctggagcagtggatcgcagagagagaagtggtggcagga
tcgcatgagctgggacaggattacgaacacgtgacgatgttacaggagcgtttccgtgag
ttcgctcgcgacaccggtaacatcggtcaggaacgcgtggattcagtgaaccgaatggct
gacgagctcatcaacgccggtcacactgatgcagcgacggtcgcagagtggaaggacggg
ctgaacgaggcgtgggcggatcttctggagctgatcgatacccgcacgcagatcctggcc
gcgtcctacgagctgcacaagttctaccacgacgcgaaggagatcctgagccgcatcctc
gacaaacacaagatgctgcctgaagaactgggccgagaccagaacacagtggagacgctg
cagaggatgcacaccaccttcgagcatgacatccaggcactggggacacaggtgcggcag
ctgcaggaagatgcggtgcgtttgcagtcggcgtatgctggtgataaagcagacgatatc
cagcgcagggagactgaagttttggacgcatggcggaatctactggaagcctgtgaagga
cgaagggcgcgtctgctggacaccggagacaagttccgcttcttcagcatggtgcgcgac
ctcatgctctggatggaggacgtcatccgccttatcgaggcccaggagaaacccagggac
gtgtcctctgtggagctgctaatgaacaaccaccagggcatcaaggctgagatagatgcc
cgtaatgacagctttactgcctgcatcgagctgggcaagtctctgctggcacggaaacac
tacgcttcagaggagattaaagacaagttgctacagttgacagacaagaggaaagaaatg
attgacaagtgggaggacagatgggaatggctaagactgattttggaagtgcaccagttc
tcacgggatgcgggggtggcggaggcgtggctgctggggcaggagccgtatctgtccagc
agggagatgggtcagagtgtggacgacgtggagaaactgatcaagagacacgaggctttc
gagaagtcagccgctacctgggaggagcgcttctctgcactggagaggctgaccacgatg
gagttattggaagtgagaagacagcaagaggaagaggaaagaaggagaaaaccccccacg
cccgagccagaagagatccaggaacagagagacggagagcagattgctcagaacggactg
ccatcagaccaggattcccctcgggacggagtggatggagagatagtgaacggcgtgcct
gagcgcagctccaaagagcccagccccatcccgtccccgacctcaggcagacgcaccaag
ggcagccagtcgtcaaccctgccggccaagggccaggattccccctccgcccagctggag
ggcctcctgcaccgcaagcatgagtgggagggccacaacaagaaggcctctaacaggtcc
tggcataatgtgtactgcgtcatcaacaaccaggagatgggcttctacaaagacaataag
aacgctgggcagggaatcccgtatcacaacgaaatccccgtcagtctaaaggacgccgtg
tgcgaggtcgccgtcgactacaagaagaagaagcacgttttcaaactgagagtgacagat
ggaaatgaatatctcttccaagccaaagatgatgaggagatgaacacgtggatccaggcc
attcaaaacgcgaccaccggctcctcagcctccgacaagtcagaaatcacccccagcaac
cagagcactcccgtctccagccgcgcccagacgctcccggcaaccgtcaccctgaccacc
gagtccagcccgggcaagcgggagaaagacaaggagaaagacaaagagaaacgcttcagt
ctcttcagcaagaagaagcagtag
DBGET
integrated database retrieval system
