Astyanax mexicanus (Mexican tetra): 103033135
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Entry
103033135 CDS
T05042
Symbol
palb2
Name
(RefSeq) partner and localizer of BRCA2 isoform X1
KO
K10897
partner and localizer of BRCA2
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03440
Homologous recombination
amex03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
103033135 (palb2)
03460 Fanconi anemia pathway
103033135 (palb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amex03400
]
103033135 (palb2)
DNA repair and recombination proteins [BR:
amex03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
103033135 (palb2)
FA (Fanconi anemia) pathway
Downstream FA components
103033135 (palb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
103033135
NCBI-ProteinID:
XP_007238194
UniProt:
A0A8B9K3G9
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Position
21:16142641..16156626
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AA seq
1366 aa
AA seq
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MAEESLRGEEKEMLRRRLELLQKEYERTAQRLQRAERKAAVRRHVQNRISDENRQLQINT
TGLSQLSPASSSVSNTNLLSNQPLQSEIKPDYGSLSSKKHPLVRFHLPDGSDDSPCSTPT
CRRSPTHRLRSKRSRLRLQSKEKEADIDSQDKAKEGVEERLGEKRNCNLTTKENGVEVER
GGEKEQADITGGDTVEEKIQNGDPEVTGSDGEIGKEQQREVLHDRLSKGDRNSDVRLQMC
SISDNASVNQVPGEVFPISQVEVKASLGNQSADINSQSSSSASDQLFMQIRSCQSTGLSE
QSDNQQADDTKREVNGAGMDSVDEINAPFSSEKNGILDSCTLVEGLPFPVEYYVRTTRRM
AAAHSPVDLNAVILSQLSRGRGRRRSSSSQARGSNHLTSEDSQPHGKSLDQPRCRGRGRR
GRRGRRRTRVEGVTKSSQARSCTDDFSEMEPESLTETSLTESSTQSPQSQSLLQTSLPGG
PSPQLEPASQTELILTPKPVLNTQPEAADFKHLSDSQLYLDCKFLPDCEVYPIFRRRCSQ
TERAGSCSQVQTSTNGKDCRPLLSLVSLAQALKMTNCTPLGQLLTSSDIQDFHLPDDEFG
QLKLQRLCTSCLNVEPLSSHYSANNTRCNSPRYSFRNLRNKNIAEGQRTDNELFSPELLP
PSAHLEGSFDQSEIRSADQLLMPRNPDQSEKHTKSANQLKSDTGSQKSCQSSITCLAEVS
QGTKDHIPLRNTKDEKTPVAYNYKEFEEDAGKQKHDLKTCEELEQGNGSPCPAVLNFSMT
LTPHMEHGPDSSLPSLGITPYLLSSVSPSDFSLIQPAPSDQSVSLYSFQHAENSSPAVPA
FNQASSAGQNVCGGTLQSQSQTTERDLQTLPGSEPANEAWLSPVTKTPLQNVYDMDSSIS
ENCHRATDVFEGENQYLDTQTGNQSPIQPEPKLEDQREVQREGLSPLQSDSSCVNKPCSS
DPSVVQTAGGESVLVMNMADTGHKLTEHTLGMENSAHLVSQRMDTETTCQSQAVEDMRNS
DKAISYGTFQKAHRFKALEGGCVLDVCSVRWPSDDCCVCVAGEWSVCVWAQKTGVQQWSL
IHTWTFAQSIISLQEVPDSPGLLCVSLGSLEITEVRILHCSSIDGEFSHAEVCKGALQAV
VAVSDCRLVCCSAPGAQQKVQVCTLSQDCRVSDVLCLVSTSRSIQTLAAVEREKDALIGW
TECKTLLIWNMKSGQLLQSIHLTEAVSTATCLKGYSYKGALCVLFQSASSNPCLEENDAV
LFTLIALNPLTGKHFTLTSVTSPPASCSERLIDGDVCESMLAGVFQSGHLTIWDLKGDVA
GVLGGVEAQSCRLARWAGPSTLLTGYLNGDVHLYQFKPTESKTNCR
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atggctgaggagagtctcaggggtgaagaaaaagagatgctcaggaggcgactggagctg
ctgcagaaagagtatgaaagaacagctcagcgactacagcgagcagagaggaaagcagca
gtacgcaggcatgtgcaaaaccgaatctctgatgagaacagacagctgcagatcaacaca
acaggtttatcccagctaagccccgcctcttcttctgtatcaaacaccaacctgctctct
aaccagcctctgcagtcggaaatcaagcctgattatggttccctctcatctaaaaaacac
cccttggtccgttttcatcttcctgacgggtcagacgattctccatgttccacaccaacg
tgcagacgaagtcccactcaccgcctgcgctcaaaacgcagtcgtcttcgtctgcagagc
aaggagaaggaggctgacattgacagtcaagacaaagcaaaagaaggagtggaggagaga
ctgggagaaaagagaaactgtaacttaactactaaagaaaatggcgtagaggtggaaaga
ggtggcgagaaagaacaggctgacattaccggaggagacactgtagaagaaaagatccag
aatggagatccagaagtgacaggaagtgatggagagattggtaaagagcagcagagagag
gtgctgcatgatagattgagtaaaggtgacaggaactctgatgtcaggttacaaatgtgt
tcaatatcagacaatgcttcagtaaatcaggtacctggggaagtctttccaattagccaa
gtagaagttaaggcttctctaggtaaccagtcagctgacatcaactcccagtcaagctcc
agtgcctctgatcagttatttatgcagatccggtcttgccagtcaacaggtctttctgaa
caatcagataatcagcaagcagatgacacgaaaagggaagttaatggtgcaggaatggac
tctgtagatgaaataaatgctccattctcttctgagaagaatggaattcttgattcctgc
acactggtcgagggtttaccttttccagtggaatactacgttcgtaccaccagacgcatg
gctgcagcccacagccctgtggacctgaatgctgtcattctcagccagctctctagaggg
aggggaagacggaggtccagctcttctcaggcacgtgggagcaaccacctgacctcagag
gactctcaaccacatggcaaaagccttgaccagcccagatgcagagggcgtggtcgaaga
ggacggagaggtcgcaggcgtacaagagtggaaggcgtgactaaaagttcccaagcaagg
tcatgtacagatgatttctccgaaatggagcctgagtctcttacagaaacatctcttaca
gaatcttccactcagtccccacaatctcaatctcttctccaaacttcactcccaggtggg
ccttctccacagctggagccagcttctcagactgagcttatcctaacacccaaaccggtg
ttaaacacacagccagaagctgcagattttaagcacctttcagattctcagctctacctg
gactgtaagtttctaccagattgtgaagtctatccaatcttcaggaggagatgtagccaa
acggaaagagctggttcatgttctcaagtccagacaagcacaaatggaaaagattgcaga
cctcttctttcattagtctctcttgctcaagctttgaagatgacgaattgcacacccctt
ggccagctgctgacatcttctgacattcaggattttcacctaccggatgatgaatttggc
caactgaaactacagagactgtgcacgtcctgcttgaatgtggaacctttgagttcgcac
tactctgcgaacaacacacggtgcaacagcccacgctatagctttagaaatcttaggaat
aagaatatcgctgaggggcagcgtactgacaatgaattgttttccccagagctcctacca
cctagtgctcacctagaaggtagctttgatcagagtgaaatacgttctgctgaccagttg
ctgatgccaaggaatcctgaccaatcggaaaagcacacaaagtctgcaaaccagttaaaa
tctgatactggtagccaaaagtcctgccagtcaagcatcacatgtctagcagaggtgagt
caaggaactaaagaccatataccgttaaggaacacaaaagatgagaagacacctgtagcc
tacaactacaaagaatttgaggaagatgctggtaaacaaaaacatgatctaaaaacatgt
gaggaacttgaacaaggcaatggatctccatgcccagcagtgcttaactttagcatgacc
ttgacgccacacatggagcatggtcctgactcttcccttccgtccctgggcatcactcct
tatttattatccagcgtctcaccttcagacttcagtcttattcagcctgcaccttctgac
cagagtgtttctctgtattcttttcagcatgcagagaattcatctccagctgtgccggcc
tttaaccaggcttcaagtgcaggccagaatgtatgtggaggtacactgcaatctcagagc
caaactactgaaagagacctccaaacactgccagggtctgaacctgcaaacgaggcctgg
ttgagtcctgtcacaaagactccactccagaatgtatatgatatggattcatccatttct
gaaaattgccatcgagccacggatgtatttgagggagagaatcaatatcttgacacccaa
acaggaaaccaatcaccgatacagcctgagcccaagctcgaagaccagagagaagtacag
agagagggcttgtctccactgcagtctgacagtagctgtgtaaataagccctgttcatca
gatccctcagtcgttcagacagcaggtggcgagagtgttttggttatgaatatggccgat
acaggccacaagttaacagaacacaccctgggcatggaaaactctgcccacctggtttcc
cagaggatggataccgagaccacttgtcagagccaggctgtggaagacatgcgtaactcg
gacaaggccatttcctatggcacatttcagaaggctcatagatttaaggctctagaggga
ggatgcgtgctggatgtatgttcggtacgatggccatctgatgactgttgcgtgtgtgtg
gctggagagtggagtgtgtgtgtctgggctcagaagacaggagtccagcagtggagttta
atacacacttggaccttcgcacagtccatcatctctcttcaagaggttccagattctcct
ggtttgctttgtgtgtctctggggagcctggagatcacagaagtgaggatcctgcactgt
tccagtattgatggggagttttctcacgcagaggtgtgtaaaggtgcattgcaggcagtg
gtagctgtatctgactgcaggctggtgtgctgctctgctcctggagcccagcagaaagtt
caggtgtgcacactttcccaagactgcagggtatctgatgttctttgcctggtttctact
agtcgaagtattcagactttggcagctgtggaaagagaaaaagatgcactaattggatgg
actgaatgtaagacccttctcatttggaacatgaagtcaggccaacttcttcagtctata
catctgactgaggctgtgtctacagctacctgtctaaagggatattcctacaagggggcg
ctgtgtgtgttatttcaaagtgcaagctcaaatccatgccttgaggagaatgacgctgtt
ctttttacgctgatcgcattgaatccacttacgggcaaacatttcactttgacctctgtc
accagcccgcctgcttcttgttctgagaggttgatagatggtgacgtttgtgaatcgatg
cttgctggcgttttccagtcgggccatctgaccatctgggatttgaaaggagacgtggcc
ggtgtgcttggaggtgtggaggcacagtcatgtcgactagcgcggtgggcggggccaagt
acactactcactgggtatctaaatggggatgttcatctctaccagtttaaacccacagaa
tctaaaacaaattgtcgttaa
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