Astyanax mexicanus (Mexican tetra): 103033135
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Entry
103033135 CDS
T05042
Symbol
palb2
Name
(RefSeq) LOW QUALITY PROTEIN: partner and localizer of BRCA2
KO
K10897
partner and localizer of BRCA2
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03440
Homologous recombination
amex03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
103033135 (palb2)
03460 Fanconi anemia pathway
103033135 (palb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amex03400
]
103033135 (palb2)
DNA repair and recombination proteins [BR:
amex03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
103033135 (palb2)
FA (Fanconi anemia) pathway
Downstream FA components
103033135 (palb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
103033135
NCBI-ProteinID:
XP_007238194
Ensembl:
ENSAMXG00000018343
UniProt:
A0A8B9K3G9
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All DBs
Position
12:complement(23460166..23476241)
Genome browser
AA seq
1363 aa
AA seq
DB search
MAEESLRGEEKEMLRRRLELLQKEYERTAQRLQRAERKAAVRRHVQNRISDENRQLQINT
TGLSQLSPASSSVSNTNLLSNQPLQSEIKPDYGSLSSKKHPLVRFHLPDGSDDSPCSTPT
CRRSPTHRLRSKRSRLRLQSKEKEADIDSQDKAKEGVEERLGEKRNCNLTTKENGVEVER
GGEKEQADITGGDTVEEKIQNGDPEVTGSDGEIGKEQQREVLHDRLSKGDRNSDVRLQMC
SISDNASVNQVPGEVFPISQVEVKASLGNQSADINSQSSSSASDQLFMQIRSCQSTGLSE
QSDNQQADDTKREVNGAGMDSVDEINAPFSSEKNGILDSCTLVEGLPFPVEYYVRTTRRM
AAAHSPVDLNAVILSQLSRGRGRRRSSSSQARGSNHLTSEDSQPHGKSLDQPRCRGRGRR
GRRGRRRTRVEGVTKSSQARSCTDDFSEMEPESLTETSLTESSTQSPQSQSLLQTSLPGG
PSPQLEPASQTELILTPKPVLNTQPEAADFKHLSDSQLYLDCKFLPDCEVYPIFRRRRSQ
TERAGSCSQVQTSTNGKDCRPLLSLVSLAQALKMTNCTPLGQLLTSSDIQDFHLPDDEFG
QLKLQRLCTSCLNVEPLSSLYSANNTRCNSPRYSFRNLRNKNSAEGQRTDNELFSPELLP
PSAHLEGSFDQSEIRSADQLLMPRNPDQSEKHTKSANQLKSDTGSQKSCQSSITCLAEVS
QGTKDHIPLRNTKDEKTPVAYNYKEFEEDAGEQKHDLKTCEELEQDNGSPCPAVLNFSMT
LTPHMEHGPDSSLPSLGITPYLLSSVSPSDFSLIQPAPSDQSVSLYSFQHAENSSPAVPA
FNQASSAGQNVCGGTLQSQSQTTERDLQTGSEPANEAWLSPVTKTPSRMYIIWIHPFLKI
AIEPRMYLRERINIYTQTGNQSPIQPEPKLEDQREVQREGLSPLQSDSSCVNKPCSSDPS
VVQTAGGESVLVMNMADTGHKLTEHTLGMENSAHLVSQRMDTETTCQSQAAEDMRNSDKA
ISYGTFQKAHRFKALEGGCVLDVCSVRWPSDDCCVCVAGEWSVCVWAQKTGVQQWSLIHT
WTFAQSIISLQEVPDSPGLLCVSLGSLEITEVRILHCSSIDGEFSQAEVCKGALQAVVAV
SDCRLVCCSAPGAQQKVQVFTLSQDCRVSDVLCLVSTSRSIQTLAAVEREKDALIGWTEC
KTLLIWNMKSGQLLQSIHLTEAVSTATCLKGYSYKGALCVLFQSASSNPCLEENDAVLFT
LIALNPLTGKHSTLTSVTSPPASCSERLIDGDVCESMLAGVFQSGHLTIWDLKGDVAGVL
GGVEAQSCRLARWAGPSTLLTGYLNGDVHLYQFKPTESKTNCR
NT seq
4092 nt
NT seq
+upstream
nt +downstream
nt
atggctgaggagagtctcaggggtgaagaaaaagagatgctcaggaggcgactggagctg
ctgcagaaagagtatgaaagaacagctcagcgactacagcgagcagagaggaaagcagca
gtacgcaggcatgtgcaaaaccgaatctctgatgagaacagacagctgcagatcaacaca
acaggtttatcccagctaagccccgcctcttcttctgtatcaaacaccaacctgctctct
aaccagcctctgcagtcggaaatcaagcctgattatggttccctctcatctaaaaaacac
cccttggtccgttttcatcttcctgacgggtcagacgattctccatgttccacaccaacg
tgcagacgaagtcccactcaccgcctgcgctcaaaacgcagtcgtcttcgtctgcagagc
aaggagaaggaggctgacattgacagtcaagacaaagcaaaagaaggagtggaggagaga
ctgggagaaaagagaaactgtaacttaactactaaagaaaatggcgtagaggtggaaaga
ggtggcgagaaagaacaggctgacattaccggaggagacactgtagaagaaaagatccag
aatggagatccagaagtgacaggaagtgatggagagattggtaaagagcagcagagagag
gtgctgcatgatagattgagtaaaggtgacaggaactctgatgtcaggttacaaatgtgt
tcaatatcagacaatgcttcagtaaatcaggtacctggggaagtctttccaattagccaa
gtagaagttaaggcttctctaggtaaccagtcagctgacatcaactcccagtcaagctcc
agtgcctctgatcagttatttatgcagatccggtcttgccagtcaacaggtctttctgaa
caatcagataatcagcaagcagatgacacgaaaagggaagttaatggtgcaggaatggac
tctgtagatgaaataaatgctccattctcttctgagaagaatggaattcttgattcctgc
acactggtcgagggtttaccttttccagtggaatactacgttcgtaccaccagacgcatg
gctgcagcccacagccctgtggacctgaatgctgtcattctcagccagctctctagaggg
aggggaagacggaggtccagctcttctcaggcacgtgggagcaaccacctgacctcagag
gactctcaaccacatggcaaaagccttgaccagcccagatgcagagggcgtggtcgaaga
ggacggagaggtcgcaggcgtacaagagtggaaggcgtgactaaaagttcccaagcaagg
tcatgtacagacgatttctccgaaatggagcctgagtctcttacagaaacatctcttaca
gaatcttccactcagtccccacaatctcaatctcttctccaaacttcactcccaggtggg
ccttctccacagctggagccagcttctcagactgagcttatcctaacacccaaaccggtg
ttaaacacacagccagaagctgcagattttaagcacctttcagattctcagctctacctg
gactgtaagtttctaccagattgtgaagtctatccaatcttcaggaggagacgtagccaa
acggaaagagctggttcatgttctcaagtccagacaagcacaaatggaaaagattgcaga
cctcttctttcattagtctctcttgctcaagctttgaagatgactaattgcacacccctt
ggccagctgctgacatcttctgacattcaggattttcacctaccggatgatgaatttggc
caactgaaactacagagactgtgcacgtcctgcttgaatgtggaacctttgagttcgctc
tactctgcgaacaacacacggtgcaacagcccacgctatagctttagaaatcttaggaat
aagaatagcgctgaggggcagcgtactgacaatgaattgttttccccagagctcctacca
cctagtgctcacctagaaggtagctttgatcagagtgaaatacgttctgctgaccagttg
ctgatgccaaggaatcctgaccaatcggaaaagcacacaaagtctgcaaaccagttaaaa
tctgatactggtagccaaaagtcctgccagtcaagcatcacatgtctagcagaggtgagt
caaggaactaaagaccatataccgttaaggaacacaaaagatgagaagacacctgtagcc
tacaactacaaagaatttgaggaagatgctggtgaacaaaaacatgatctaaaaacatgt
gaggaacttgaacaagacaatggatctccatgcccagcagtgcttaactttagcatgacc
ttgacgccacacatggagcacggtcctgactcttcccttccgtccctgggcatcactcct
tatttattatccagcgtctcaccttcagacttcagtcttattcagcctgcaccttctgac
cagagtgtttctctgtattcttttcagcatgcagagaattcatctccagctgtgccggcc
tttaaccaggcttcaagtgcaggccagaatgtatgtggaggtacactgcaatctcagagc
caaactactgaaagagacctccaaacagggtctgaacctgcaaacgaggcctggttgagt
cctgtcacaaagactccctccagaatgtatataatatggattcatccatttctgaaaatt
gccatcgagccacggatgtatttgagggagagaatcaatatctacacccaaacaggaaac
caatcaccgatacagcctgagcccaagctcgaagaccagagagaagtacagagagagggc
ttgtctccactgcagtctgacagtagctgtgtaaataagccctgttcatcagatccctca
gtcgttcagacagcaggtggcgagagtgttttggttatgaatatggccgatacaggccac
aagttaacagaacacaccctgggcatggaaaactctgcccacctggtttcccagaggatg
gacaccgagaccacttgtcagagccaggctgcggaagacatgcgtaactcggacaaggcc
atttcctatggcacatttcagaaggctcatagatttaaggctctagagggaggatgcgtg
ctggatgtatgttcggtacgatggccatctgatgactgttgcgtgtgtgtggctggagag
tggagtgtgtgtgtctgggctcagaagacaggagtccagcagtggagtttaatacacact
tggaccttcgcacagtccatcatctctcttcaagaggttccagattctcctggtttgctt
tgtgtgtctctggggagcttggagatcacagaagtgaggatcctgcactgttccagtatt
gatggggagttttctcaggcagaggtgtgtaaaggtgcattgcaggcagtggtagctgta
tctgactgcaggctggtgtgctgctctgctcctggagcccagcagaaagttcaggtgttc
acactttcccaagactgcagggtatctgatgttctttgcctggtttctactagtcgaagt
attcagactttggcagctgtggaaagagaaaaagatgcactaattggatggactgaatgt
aagacccttctcatttggaacatgaagtcaggccaacttcttcagtctatacatctgact
gaggctgtgtctacagctacctgtctaaagggatattcctacaagggggcgctgtgtgtg
ttatttcaaagtgcaagctcaaatccatgccttgaggagaatgacgctgttctttttacg
ctgatcgcattgaatccacttacgggcaaacattccactttgacctctgtcaccagcccg
cctgcttcttgttctgagaggttgatagatggtgacgtttgtgaatcgatgcttgctggc
gttttccagtcgggccatctgaccatctgggatttgaaaggagacgtggccggtgtgctt
ggaggtgtggaggcacagtcatgtcgactagcgcggtgggcggggccaagtacactactc
actgggtatctaaatggggatgttcatctctaccagtttaaacccacagaatctaaaaca
aattgtcgttaa
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integrated database retrieval system
