Astyanax mexicanus (Mexican tetra): 103033340
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Entry
103033340 CDS
T05042
Symbol
shq1
Name
(RefSeq) protein SHQ1 homolog
KO
K14764
protein SHQ1
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
amex03009
]
103033340 (shq1)
Ribosome biogenesis [BR:
amex03009
]
Eukaryotic type
Sno RNPs
Box H/ACA snoRNPs
103033340 (shq1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SHQ1
SHQ1-like_CS
Motif
Other DBs
NCBI-GeneID:
103033340
NCBI-ProteinID:
XP_022518458
Ensembl:
ENSAMXG00000043822
LinkDB
All DBs
Position
5:1682265..1799982
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AA seq
587 aa
AA seq
DB search
MITPAFELSQDPDYLTLVIRVPYTRTSEFDVYIDGEDFKFYAKPYFLRLTLPGRIVQDGR
EKASFDIDKGLFTMRVPKETAGQDFEGLQMLTSLLAPKGCRSAKPLVEDVGTSGRSEADE
DEDEDEDEEEDFDWQVEQEPYVESSEDDLKKLQKYGFGNLRTGVFSRLQEELSDVIDLED
PENSTPAMRRSSRLNAETTIFCADHYLCDLYEGEETRQIHLEFKPWWSELKPDADLSEPA
VIFTDDEKEQMRKFTNRSYLLDKATRHQVWLGLVDVILAYVYDVRTTEGEHNVESAWTIR
KLSGTLSWLETYHSVQEVLVSFGRRVLCYPLHRHFSLITTAVRDAAHIFQCGKACVLKCL
LSIHKIFRENEPAYILNDLYISDYCVWIQRVKSRHVVALADPLRKSELQKDHLDLELIIL
EKAAELVVEEEEEEKKKERKEEETSSSSSSEEEEEEDSTSSSEEEEEKEAEKDNSSVFQS
SETQERRDQLIQELSERMEEGLRMEEEDVPQSSRPSSSLSSQRPAGDASPSSAATAAGGG
GGRTSRALVDISGQSQSCRKTLNIVDTEDLDSDDEEDEYEEKKTANH
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgatcaccccggcgtttgagctgagtcaggacccggattatctcacgctggttatccga
gtgccgtacacccggacgtctgagtttgatgtttacattgatggggaagacttcaagttc
tacgccaagccttattttctcaggttgactctgcctgggaggatagtgcaggatggaagg
gaaaaggcctcgtttgacattgataaaggactgtttacgatgcgcgttcccaaggagacg
gcgggtcaggacttcgagggtcttcagatgctgacgagtcttctggctcctaagggatgt
agatccgctaaacccctggtggaggacgtaggcacgagcggcagaagcgaggcagatgag
gatgaggatgaggatgaagatgaagaggaggattttgattggcaggtagagcaggagccg
tatgtagaatcttcagaggacgacctgaaaaagctgcagaaatacgggtttgggaacctg
aggaccggagtcttctccagactgcaggaggagctgtcagatgttattgatttagaagat
ccagaaaattcaactcctgctatgcggagaagcagccgcttgaatgctgagaccaccata
ttttgtgctgatcactatctgtgtgatctgtatgaaggtgaggagacgaggcagattcac
ctggaatttaagccgtggtggagcgagctgaagccagacgctgatctctctgaacctgct
gtgattttcacggacgatgaaaaagagcagatgaggaaattcaccaatcgttcctacctg
ctggataaagccacccgacaccaggtttggctcggcctggtggacgtcatcctcgcctat
gtgtatgacgttcgcactacagaaggagaacacaacgtggagtcagcatggaccatcagg
aaactcagtggaactctgagctggcttgagacgtatcactcagtgcaggaggtgctggtg
tcgtttgggaggagggtgttgtgttatccgctacaccgccacttctctctgatcaccacc
gcagtgagagacgccgctcacattttccagtgcggtaaagcctgcgtcctgaagtgcctc
ctctccatccataagatcttcagagagaacgagccggcctacatcctcaacgacctctac
atctcagactactgcgtctggatccagcgggtgaaatcgaggcacgtggtggctctggct
gatccactgcgtaaatccgagcttcagaaggaccatttggacctggagctgatcattctg
gagaaagctgctgaactggtggttgaggaggaagaggaggagaaaaagaaggagagaaaa
gaggaggaaacatccagcagcagcagtagtgaagaagaggaggaggaagactctaccagc
agcagtgaagaagaagaggaaaaggaggcggagaaagataacagcagcgtttttcagtct
tcagaaacacaagaacggagagatcagctgatccaggagctgagcgagaggatggaggag
gggctgaggatggaggaggaggacgtccctcagtcctcccgtccctccagcagtctcagc
tcacagagaccagcaggagacgcgtccccgtcctctgcagctacagcagctggaggagga
ggaggacgaaccagcagagctctggtggacatatctggacagtctcagagctgtaggaag
acgctgaacatcgtggacactgaggacctggacagcgacgacgaggaggacgagtacgag
gagaagaagacagcaaatcactga
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integrated database retrieval system