Astyanax mexicanus (Mexican tetra): 103033659
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Entry
103033659 CDS
T05042
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
103033659 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amex03021
]
103033659 (polr1a)
Enzymes [BR:
amex01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
103033659 (polr1a)
Transcription machinery [BR:
amex03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
103033659 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
TssR_VWA
Motif
Other DBs
NCBI-GeneID:
103033659
NCBI-ProteinID:
XP_022539298
LinkDB
All DBs
Position
10:17915766..17935481
Genome browser
AA seq
1703 aa
AA seq
DB search
MLFSKETPWRRLEGMSFGMYSTEEIRKLSVKSITNSILLDNVGTAAPNGLYDLALGPADS
KEICTTCMQDFTHCPGHFGHIDLHLPVYNPLLFDKLYLIIRGSCLSCHMFTCPRAAIHLL
LNQLKLLDVGAIREVYEIDVALKQFLEGSPKASGAEIQDTLEAFSAPIIKASKGRDGSAP
IKHVCEIKSSLIRDFWKVHMSSRKCPNCKAGKAQVRREHNSKLIVTRAFGKNDTAEQEDD
VYMGKRGYLTPSLAREHVIKVWEKEGFFLKYLFSGLAVNSPNGFSPDMFFLELLIVPPCR
YRPINRLGDQMFTNGQTVNMQAVMKDNSIIQKLLALIAAEKAKQIEDPQTELEESSETTD
VSQTDQAFLVGLNGVTLTDKLYNVWIRLQSHVNIVFDSDMDKLMTEKFPGIRQILEKKEG
LFRKHMMGKRVDFAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVLN
GPNVHPGASMVINEDGSRTILSSSNVTQREAIAKQLMTPTTGQHRIPMKIVNRHIKNGDV
LLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAE
AYNLVSTDHQYLVPKDGTPLAGLIQDHMVSGTSMTIRGCFFTRDQYMELVYRGLTDRIGR
VKLLPPAVLKPRLLWTGKQIVSTLLLNVIPENHIPLNLTGKAKIPSKAWVKEPPRSTPGY
QPDSMCESQVVIRHGELLVGVLDKAHYGSSAYGLVHCCYELYGGGTSGKLLSCLARLFTA
YLQLYRGFTMGVEDILVKAGANLQRKKIIKESVKCGAKALQAAFNLSSTAEESKGRDLWQ
DAHLNVDQRDFNMVDLKFKEEVNQVNNNINKVCMPLGLHRSFPENNLQLMVQSGAKGSTV
NTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYEAEPRSGGFVTGRFLTGIKPPEFFFH
CMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIP
KTQFLQPRQFPFIKENYEVIRKSKCLDEVLAKLDPKAAQSHFQAIKKWKAKHEHASPRTG
AFLLFSQKKLGKMKAEAEGLSVDLNNGRVALTLQLMEKWKTLDDGSRVKYLKKTSHCPDP
CLAVFRPDICFGSVSETFSSMIETYLSQFNIKHEFDSSSGSGYCESLRNLLQLKWQRALC
DPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILLIASSNIKTPMMS
IPVLKNKKAMKRVKILRKKLTRVCLAEVLHKVDVLETLRMTKKISQNKQIFTVTFHFLPP
ERYKEDKLLSPQSILSFMEQRFFRLLLEAIKKLSAKLASINAVDTRKATTKDSDRDVGGS
ETAVDDGDGDGEELRVVDDEADEGDADAADAKRKEKQEEEVDYESDEGEENGDEEQEEVM
EGSEQKSQESEEQFEERPNRISPPIPSESSNNQEQADGTQDSMRITSVLQISDSIEGYKY
DDTNGLWCEITLSLPVSKVHFDLTSLVVAQAQNAVIIETKGITRCLLNEVTTKDGAKELF
LKTEGINMHEMFKHGHILDLNRLYSNEIHAMANTYGIEVALRVIEKEIKDVFAVYGIEVD
PRHLSLVADYMCFEGVYKPLNRLGIQSNSSPLQQMTFETSFKFLKEATMLGSYDKLNSPS
ACLVVGKVVKGGTGLFDLKQPLQ
NT seq
5112 nt
NT seq
+upstream
nt +downstream
nt
atgcttttctctaaagaaacgccatggaggcggctggagggcatgtcgttcggcatgtac
tctacagaggagatcaggaaactgagtgtcaaaagtatcaccaattccattcttttggac
aatgttggcaccgctgcccccaacgggctttatgatttggccctgggtcccgctgacagt
aaagaaatctgcacaacatgcatgcaggactttacccactgcccaggacactttggccac
atcgacctgcacttgcccgtctacaaccctctgctgtttgataaattgtacttgataata
cgaggttcctgtctgtcgtgccacatgttcacgtgtccaagggctgccattcaccttctt
ctcaaccagctcaagttattagatgttggtgcaatcagggaagtgtatgagattgatgtt
gctcttaaacagtttttagaaggcagtccaaaggcatcaggggcagaaattcaagacact
ttggaagcattcagtgccccaattattaaagccagtaaaggcagagatggcagtgcacct
atcaagcatgtgtgtgagatcaaatccagcctaattcgtgacttttggaaggtccacatg
agctcaagaaaatgtcccaattgcaaggctggcaaggcacaagtacgcagggaacacaac
agcaagctgattgttacacgtgcgtttggtaaaaatgacacagcagaacaggaagatgat
gtctacatgggtaaacgtggatacctcactccaagcttagctcgagaacatgtcatcaag
gtgtgggaaaaagaaggattcttcttgaagtatttgttctcaggcctggcagtgaacagt
cccaatggcttcagcccagatatgttcttcttagaattgctgatagttcctccatgcagg
tatcgacctattaatcgattgggggatcagatgtttaccaacggtcagacagtgaacatg
caggccgtgatgaaagataattctattattcagaaactgcttgctcttattgcggctgag
aaagcaaaacagatagaagatcctcagacagagctggaggagtccagcgagacgacagac
gtcagtcagactgaccaggcattcttagtgggcctgaacggagtcaccctcacggacaaa
ctgtacaatgtgtggatccgcctacagagtcatgtcaacatcgtctttgacagtgacatg
gacaagctaatgactgaaaagttccccgggattcgccagatcttggagaaaaaggaaggt
ctgttcaggaagcatatgatggggaaacgtgtggactttgcagctcgttctgtcatttgt
ccagacatgtacattggaaccaatgagattggaatacccatggtgtttgccaccaagctg
acatacccacagccagtcacaccctggaatgtaaaggagctgcgacaagctgtcctgaat
ggacccaatgtgcatccgggggcttctatggtgatcaatgaggacggctcacgtaccatt
ttaagcagctccaacgtgacccagagagaagccattgccaaacagcttatgacacccacc
acaggccagcatcgaatacctatgaagattgtgaatcgccacataaaaaatggagatgtg
cttcttctcaatcggcagcccacattgcacaggccctcaattcaagcacactgtgctcgc
attttaccaggagagaaggtgcttaggctgcactatgctaactgcaaggcctacaatgct
gacttcgatggtgatgagatgaacgcacacttccctcagagcgagttgggccgggctgag
gcctataatcttgtcagcacggaccatcaatacttggtgcctaaagatggaacaccctta
gctggtcttatccaggaccacatggtgtcaggcaccagtatgactatccgtggctgcttc
ttcacacgagaccaatacatggaactggtctatagaggacttactgatagaattggcaga
gtaaagctcctccctcctgccgtccttaaacctcgcttgctctggactggcaaacagatt
gtgtccaccctcttactgaatgtaatcccagagaaccacatccctctgaacctgacagga
aaagccaagatccccagtaaagcttgggtgaaggagccccctcggtccaccccaggatac
cagcctgattctatgtgtgaatctcaggtggtcattcgtcatggggagctgctggtgggt
gtattggacaaagctcactatggaagctctgcatatggcctagtgcattgctgttatgag
ctctatgggggcgggactagcggaaagctgctcagctgcctggctcgcctgttcactgcc
tatttgcagctttaccgtggcttcactatgggtgtggaagacattttggtgaaagctgga
gccaacttgcaaagaaaaaaaatcatcaaagaatctgtgaaatgtggagccaaggctctc
caggctgcctttaacctctcttctactgcagaggaaagcaaaggcagggacctgtggcag
gatgcccatttgaacgtagaccagcgcgacttcaatatggtagacctcaaatttaaagaa
gaagtcaatcaagtcaacaacaacatcaacaaggtttgcatgccacttggtctgcatcga
tcatttccggagaataaccttcagctcatggtgcagtcaggagccaagggttccacagtt
aacacaatgcagatttcctgtctgctgggtcagattgaactggaggggcgtcgtcctccc
ctgatgccttctgggaagtccttaccttgctttcagccttatgaggcagagcctcgttct
ggaggatttgtaactggcaggtttctgactgggatcaaacctccggagttctttttccat
tgtatggctggtcgtgaaggtctggtagatactgctgtaaaaacaagtcgttctgggtat
ctgcagagatgtgtgataaagcatctggaggggttggtggtccagtatgatctgactgta
agggacagtgacggcagtgtggtgcagttcctgtatggagaggatggtctggacataccc
aaaactcagttcctgcagccacgccagtttcccttcatcaaagaaaactatgaggttatc
agaaagtctaaatgtttggatgaggttctggctaagctagacccaaaggcagcacaaagc
cactttcaagccatcaagaagtggaaagccaagcatgagcatgcatcaccccggactggt
gcctttcttctcttctctcagaagaagctggggaagatgaaggctgaagctgaaggtctg
tctgtggacctaaataatggaagagttgcactcacgctacagttgatggagaaatggaaa
acactggatgatggcagtcgagtaaagtatctaaagaagacatcccactgcccagatccc
tgtctggctgttttccggcctgatatttgctttggttctgtgtctgagacgttcagctcg
atgattgaaacctacctcagtcagttcaatatcaagcatgaatttgattcttcatctgga
agtggttactgtgagagcttgaggaatctcttacaactgaagtggcagagggcactctgt
gaccctggagaggctgtggggctgctggctgcgcagagcattggggagccttccacacag
atgactctaaacacatttcactttgctggcagaggggagatgaacgtcaccctgggaatt
cccaggttgcgtgaaattttattgattgctagctccaacattaagactcctatgatgagc
attccagttttaaagaacaaaaaggccatgaagcgggtcaagattctccggaaaaaactc
acacgtgtgtgcttggcagaggtgttgcataaagttgatgtgctcgagacacttcgcatg
acgaagaaaataagccagaacaaacaaatcttcacggtcacattccacttcctgcctcca
gagcgttacaaggaggacaagttattgtctcctcaaagcatcctttcattcatggaacaa
aggtttttccggttacttcttgaagccatcaagaaactgagtgccaagctggcctctatt
aatgcagtggacacacgcaaggccacaaccaaagatagtgatcgggatgttgggggctct
gagactgcggtggatgatggagatggggatggagaggagctcagggtggtggatgatgaa
gcagatgaaggggatgcagacgctgctgatgccaagagaaaagaaaaacaagaggaggag
gttgactatgagagtgatgaaggcgaggaaaatggtgatgaagaacaagaggaagttatg
gaaggatctgagcagaaatctcaggaatctgaggaacagtttgaagaaaggccaaacagg
atttcaccgcccataccttcagaatcttccaacaaccaggagcaggcagatggtacacag
gattccatgaggattacaagtgtactacagatcagcgacagcattgagggctacaaatat
gacgacacaaacggcctgtggtgtgagatcacgctgtccctgcctgttagcaaagtccac
tttgacctcacatcattggtggtagcacaagctcaaaatgcagtcatcattgaaacaaaa
ggcatcacacgatgcttactgaatgaggtgaccactaaggacggcgccaaggaactgttc
ctgaaaacagagggcatcaacatgcatgagatgttcaaacacggacatattctagactta
aatcgcttgtattcgaatgagatccatgccatggccaacacatacggcattgaagtggct
ctgagagtcattgagaaggagatcaaagatgtgtttgctgtttacggtattgaggtagat
ccacgacacctgtctcttgtggctgactacatgtgctttgaaggggtgtacaaacctctt
aaccggctaggcattcagtccaacagctctcccctacaacagatgacttttgaaaccagc
ttcaaatttttgaaagaagctaccatgctgggttcctatgacaagttgaactcaccctct
gcttgcttggttgtgggaaaagttgtgaaaggagggactggactcttcgatttgaagcag
cctttacagtga
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integrated database retrieval system
