Astyanax mexicanus (Mexican tetra): 103034403
Help
Entry
103034403 CDS
T05042
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
amex03041
]
103034403 (ddx1)
03016 Transfer RNA biogenesis [BR:
amex03016
]
103034403 (ddx1)
Enzymes [BR:
amex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103034403 (ddx1)
Spliceosome [BR:
amex03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
103034403 (ddx1)
Transfer RNA biogenesis [BR:
amex03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
103034403 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
103034403
NCBI-ProteinID:
XP_049335776
Ensembl:
ENSAMXG00000002100
LinkDB
All DBs
Position
1:complement(52155469..52167525)
Genome browser
AA seq
740 aa
AA seq
DB search
MAAFGEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKKGRAAVKTGGAVFNKWQMNPYDRSPAFAIGPDGLCCQSREFKEWH
GCRSTKAVTKGKYYYEVSCHDQGLCRIGWSTSQAALDLGTDKYGFGFGGTGKKSHNKQFD
SYGEEFTMHDTIGCYIDMDKGHVSFSKNGNDLGLAFEIPQNLRSQPFFASCVLKNAELKF
NFGGEPFKNAPKEGFKALDQAPDGHVVKSSQTGSATVSQVKSSSNSPRALIIEPSKELAE
QTLNNVNQFKKYVENPKLRDLLIIGGVAAKEQLSTLESGVDIVVGTPGRLDDLISTGKLD
LSQVRFLVLDECDGLLSAGYTDFIMRVFNKIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPETVHHVVVPINPKNDRLWERLGKNHIRTDEVHAKDNTRPGAN
SAEMWSEAIKILKGEYAVRAIKEHKMDQAIVFCRTKIDCDNMEQYFIQQGGGPDKKGHQF
SCVCLHGDRKPNERKNNLERFKKREVRLLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAMEKEKVWYHVCANRGRGCSNTRLKEDGGCTIWYNEKELLG
DIEEHLKCTITQCEPDIKVPLDEFDGKVTYGQRRAAGGGLYKGHVDVLAPTVQELANLER
EAQTSFLHLGYLPNQLFKAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgtttggagagatgggcgtgatgcctgagatcgctcaggctgttgaggagatg
gactggctgttgccaacagacattcaagctgagtctattccactgattcttggtggagga
gatgttcttatggctgctgagactgggagcggaaaaactggggcgttcagcatcccagtg
atccagatcgtgtatgaaacattaaaggatcagcaggaggggaagaagggtcgtgctgca
gtgaagacaggaggagcagtgtttaataagtggcagatgaacccatatgacagaagccca
gcatttgctattggcccagatggactttgctgccaaagcagagagtttaaggagtggcat
ggctgtcgttccaccaaagctgtgactaagggcaaatattactatgaagtctcctgtcac
gaccaagggttgtgcagaattggttggtccactagccaggctgcattagacttgggtacg
gacaagtatggctttggctttggaggtaccgggaaaaaatcccacaataagcagtttgac
agttacggagaggagtttactatgcatgacaccatcggatgctacatagacatggacaag
ggccatgtgtcattttctaaaaatggaaatgatcttggcttggcctttgagattccacaa
aacctgagaagccagccattctttgcctcctgtgtgctcaagaatgctgaactaaagttt
aattttggaggagagccatttaaaaacgcccccaaagagggctttaaggccttggaccaa
gcgccagacggacatgtggtcaaatcaagccaaactggcagtgccacagtgagccaggta
aaatccagctccaactctcccagagctcttattatcgaaccatcgaaagagctggccgag
cagaccctcaacaatgtcaaccagtttaagaaatacgtggaaaaccccaaactacgagat
ctgctgatcattggaggagtagcagccaaagagcagctctctactttggaaagtggggtt
gatatagttgttggcacaccaggcagactggatgacctcatatctacagggaagctggat
ctgtcccaagtccgcttcctggttctggatgagtgtgacgggcttctctcagctgggtac
actgacttcatcatgagggtcttcaacaagatccctcaggtcacctcagatggaaagagg
ctacaggtcattgtatgttcggctacactgcactcatttgatgtgaagaagctctcagag
aagatcatgcacttccctacctgggttgacctgaagggggaggattctgtcccagagact
gtccatcatgtggtggtgcctatcaaccccaaaaatgatcggctttgggagagacttggc
aagaaccatataaggactgatgaggttcatgccaaagacaacacaaggcctggagctaac
tctgcagagatgtggtcagaggccataaagatcctgaagggagagtacgcagtgcgggcc
atcaaagagcacaagatggaccaggccatcgtcttctgcagaaccaagatcgactgcgac
aacatggagcagtacttcatccagcaaggaggaggtccagataaaaagggacatcagttc
tcatgcgtctgtctccatggtgacaggaagcccaacgagcgtaaaaacaacttggagagg
ttcaagaaacgtgaggtgaggttgctgatttgcacagatgtggctgccagaggaatcgac
atccatggtgttccatatgtgattaatgtgactctgccagatgagaaacagaattatgtg
catcgcattggaagagttggcagagctgagagaatgggtctagccatttccctggtggcc
atggaaaaggaaaaagtgtggtaccatgtctgtgctaacagagggcgaggctgttctaac
accagactgaaggaagatggaggctgcactatatggtacaatgaaaaagagctgttggga
gatattgaggaacacttgaagtgcaccattacgcagtgtgagccggacatcaaagtgcct
ttggatgaatttgatggcaaggtcacctacggccagcgcagagctgcaggaggtggtctc
tataaggggcatgttgatgtactggctcccactgtacaagaactggctaatcttgagcgg
gaggcacaaacctctttcctgcacctgggatacctccccaaccagctcttcaaagctttc
taa
DBGET
integrated database retrieval system
