Astyanax mexicanus (Mexican tetra): 103034461
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Entry
103034461 CDS
T05042
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex04382
Cornified envelope formation
amex04510
Focal adhesion
amex04512
ECM-receptor interaction
amex04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
103034461 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
103034461 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
103034461 (col4a2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
103034461 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
amex04147
]
103034461 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
amex00536
]
103034461 (col4a2)
Exosome [BR:
amex04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
103034461 (col4a2)
Glycosaminoglycan binding proteins [BR:
amex00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103034461 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
103034461
NCBI-ProteinID:
XP_007227990
LinkDB
All DBs
Position
11:complement(8925386..9030737)
Genome browser
AA seq
1669 aa
AA seq
DB search
MKFEVRMEGVMKKLRFLLICLVVLALTSEVDAGGKKHQGPCGGRDCSGGCQCFPEKGGRG
QPGPLGPQGPTGPPGRPGEPGLQGAAGEKGDRGRGGTTGPKGSVGMTGVPGFSGSDGIPG
HPGQAGPRGKPGADGCNGTHGDAGTPGQRGYDGPRGNPGYVGRKGEKGDNLEISVYMQRF
RGDMGPPGYPGNPGFPGGPGYAGRPGPFGARGLPGAPGPPGPPGDRVYGVKGEKGELGEA
GEPGYAWNYTTQHKKPTESGKGEKGAKGQPGGLEGFTKGEEGIMGFPGLRGNPGRSGWPG
AKGDRGLPGFPGQPGRKGQPGEPGELIYGEAFGVGPPGPQGERGSPGSRGPQGPKGQQGP
PGPDPEGQQTVVFSQDGPKGFKGSKGERGGPGAPATSPGPPGFDGYPGAPGPPGEKGSWG
IFFKGSEGPRGRPGNAGRKGPKGDHGQCDCISSSPHGQPGLPGPSGDPGMAGEWGQQGDQ
GDPGPRGESGLPGFPGPGGFPGPRGLKGEGTTIKEKGPPGDQGDSGRPGEPGETGRTGPS
GTDGAPGLHGPPGEGPVGEPGEKGYPGRPGLPGLAGPSGVTGQVFGAPKGIRGFPGDPGP
SGYDGNQGLPGIPGGCSPSGEGGKWDTAGSGNGECEAVPGPPGERGLPGPSGLPGFQGVP
GPKGYAGLTGQQGAKGEQGDQGRGGQPGPRGFTGPRGEFGNPGLKGGRGVPGLFGKHGQD
GDPGLKGADGEALGASPGPLGDAGLPGQQGDPGPAGDRGKSGYPGMEGMPGMIGTKGEAG
PSGLQGELGRPGPAGIFGYPGLPGQSGNPGPPGQTGEEGPRGESGDQGNTGSPGPMGVKG
VTGEPGSNAGLGQTGPRGDPGHPGFTGRIGLPGLKGVRGSQGMTGFQGMPGNLGPEGFSG
EKGEIGFSGVRGEKGIKGRQGEKGDSGLIGPPGEPPVIKMDHMKKTMKGIKGDHGKPGDP
GFTGPRGTKGYPGVPGQEGHHGLPGEPSTEKGLEGSAGAEGLPGQKGMPGATGSQGIPGF
PGMDGPRGEKGSPGAYGPSGGFGSKGVKGDKGDVIDLPGPTGPRGESGDSGPSGHKGFTG
EPGDRGGSGFDGIEGMKGYPGDPGQQGLPGGEGLQGFPGNQGTKGWAGTPGTPGTPGRPG
HTGQRGFPGLKGIFGLDGLKGQKGLKGLPGPDVWGTPGDPGVKGGKGEIGVPSTEVGVLG
SDGLKGSTGDAGDQGSPGQPGVPGPPGAHGIPGRQGFSGDPGPRGQKGLTGFPGPTGLPG
FPSPFGSKGEQGVHGETGFTGPKGFPGDIGEKGLPGQPGISGRKGSKGDQGMMGLPGKPG
FQGDRGPTGPKGDSGPPGLPGAPGAQGKLPVPVKVPGERGLPGPYGIRGPEGVRGESGPI
GPPGNQGFLGPEGQKGMPGLPGIPGNPGFRGDVGTVGHPGLLGLEGPAGRPGTSGRPGMP
GRSVSVGYLLVKHSQSDQTPMCPVGMSKLWDGYSLLYFEGQEKAHNQDLGLAGSCLPRFN
TMPFLYCNPGDLCYYASRNDKSYWLSTTAPIPMMPVEEEEIKPYISRCSVCEAPSVAIAV
HSQDITIPQCPLGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRTTPFIECNGAK
GTCHYFANKNSFWLTSINQPFQTTPESETLKAGQLLSRISRCQVCMKNL
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgaagtgcggatggagggagtgatgaaaaagctgaggtttcttctgatttgc
ctcgtcgtcctcgccttgacgtctgaagttgacgcaggtggtaagaagcaccaaggacca
tgtgggggcagagattgcagtggagggtgtcagtgttttcctgagaaaggcggcaggggt
cagccaggccctcttggccctcagggccctacagggcctccaggacgtcccggcgaacca
gggctccagggtgctgcaggagagaagggtgaccggggcagaggaggcaccacggggcca
aaaggatctgtgggtatgaccggagttcctggcttttcgggaagtgatggtattccaggt
cacccgggtcaggccggcccccgaggtaaacctggagccgacggctgtaacggaacacat
ggtgatgccggaactcctggacaacgaggatacgacggcccacgaggaaatccaggttat
gtaggaaggaagggagagaagggagacaacctggagatttcggtttacatgcaaagattt
cggggagatatgggaccaccaggatatccaggcaacccgggctttcctggaggaccaggt
tatgcagggcggcccggtccttttggtgctcgtggtcttcctggtgctccaggacctcca
ggaccaccgggtgatagggtttatggcgtgaagggagaaaagggagaactgggggaggct
ggagaaccaggctatgcatggaactatacaacccaacacaaaaaacccactgagtctggg
aaaggtgaaaaaggtgcaaaaggtcaaccaggaggtttggagggattcaccaaaggagaa
gaaggcattatgggctttccagggttacggggaaacccaggaagaagtggatggccagga
gcaaagggtgacagggggcttccaggttttccagggcaaccaggaagaaagggccagcca
ggagaaccaggagagctgatctatggagaagctttcggagttggtcctccaggtccacaa
ggagaacgtgggtcaccaggaagtcgtggccctcaagggcctaaaggacaacaaggtccc
ccagggcccgatcccgagggccagcaaacagttgtctttagccaagatggacccaagggt
tttaaaggaagtaaaggtgaacgtgggggacctggtgcccctgccacaagccctggtcct
cctggttttgacggctatccaggagcacctgggccgcctggagaaaagggttcatgggga
atttttttcaaaggttctgaaggaccacgcggacgtccaggaaacgcgggacgaaaaggg
cccaaaggtgaccatggtcagtgtgactgcatatcgtcctcccctcatggacagccggga
ctacctggcccgtctggagaccctggaatggcaggagagtggggtcagcagggtgatcaa
ggagacccagggccaagaggagaatctggactgcctggctttcctggtccaggagggttt
cctggacctcggggactcaaaggggaagggacgacgattaaagagaaaggaccacctgga
gatcaaggagactccggcagacctggagaacctggagaaaccggcaggactgggcctagt
ggtacagatggtgcccctggactccacggtcctccaggtgagggtccagttggagagcct
ggagagaaaggctaccccggcagaccaggtttaccagggttagcaggtccatcaggagtt
actggtcaagtgtttggagcacccaagggtataagaggttttcctggagatccagggcca
agtggttatgatggaaatcaaggcctaccgggcattccaggaggctgtagtccaagcgga
gaaggaggcaagtgggacacagcagggagcggcaacggggagtgtgaggcagtgccagga
cccccaggagaaagaggacttcctggaccatctggtttgccaggatttcaaggtgtacct
ggtcctaaagggtatgcaggattaactgggcagcaaggagctaaaggagagcaaggagac
caaggcagaggaggtcaaccaggaccaagaggttttactggacctcgtggagagtttggt
aatcctggtcttaaaggtggccgtggagttcctggcttgtttggtaagcatgggcaggac
ggtgatcccgggcttaaaggtgctgatggcgaggctctaggagcatctcctggaccactt
ggagacgccggattaccaggacagcaaggtgacccaggtcctgctggagatcgtggcaaa
agtggatacccaggtatggagggaatgcctgggatgatcggcaccaaaggtgaagcaggt
ccatcaggattacagggagagctgggaagacctgggcctgcagggatattcggatacccc
gggctgcctggtcaatcagggaaccctggtcctccaggacagactggagaagaaggcccc
aggggagaaagtggtgatcaaggtaacaccggttcaccagggcctatgggagtaaagggt
gttactggagaacctggaagtaatgccggcttgggtcagactggacctcggggagatcca
ggacaccccggatttactggtcggattggtcttcctggactgaaaggtgtcagaggctct
caaggcatgacgggctttcaaggaatgcctggaaatctaggtccagagggattcagtgga
gaaaagggggagataggcttttcaggggtcagaggagagaaaggaataaaaggacgtcaa
ggagaaaaaggtgactcagggcttattggtcctccaggtgaaccaccggtcataaaaatg
gatcatatgaaaaagaccatgaagggtataaaaggtgatcatggaaaaccaggagatcca
ggtttcactgggccccggggtactaaaggttatccaggggttccaggacaagaggggcac
catggtctcccaggagaacccagcactgaaaaggggttggaaggatcagctggagctgag
ggattacccgggcaaaagggaatgcctggagctacagggtcccaaggaatacctggcttt
cctggaatggatggaccaaggggagagaaaggttcacctggtgcctacggaccatcagga
ggctttggaagcaagggggtcaaaggtgacaagggtgatgtcatagatcttcctggaccc
acaggaccaagaggagagtctggggattctggaccttcaggccataaaggtttcacaggt
gagcctggagatagaggaggttctggttttgatggcatcgaaggaatgaaggggtatcca
ggtgatcctggacaacaaggactgccaggtggtgaaggactgcagggtttcccaggaaac
cagggtactaaggggtgggcaggaactcctggtacacctgggacccctggtagaccaggg
cacactggacaaagaggtttccctgggctgaaaggtatttttgggttggatggactcaaa
ggtcaaaaaggtcttaaaggccttccaggccctgatgtctgggggacaccaggtgatcct
ggagtgaagggaggaaaaggagagataggagttcctagcacagaggttggtgttctgggg
tctgacggccttaagggttccacaggtgatgcaggtgatcagggcagcccaggtcagcca
ggtgttccgggtcctccaggggcacatggaattccaggcaggcagggtttctcaggggat
ccaggaccacgtggccagaagggtctaacagggtttcctggacccactggtctaccaggt
tttccatctccatttggctctaaaggagaacaaggtgtacacggggaaacagggttcact
ggacctaaagggttcccgggggacataggagagaaaggcctgccaggacagcctggaatt
tcaggaaggaaaggttcaaagggagatcaaggaatgatgggattacctggaaaacctgga
ttccagggtgatagaggacccactggtccaaaaggagacagtggaccaccaggtttgccc
ggtgcccctggtgctcagggaaagctaccagttcctgtgaaggtgccaggcgagagaggg
ctgcctggtccgtatggtatccgtggaccagaaggagttagaggagagtcaggaccaatt
ggacctcctggaaatcaagggttcttggggccagaggggcagaaggggatgccagggttg
cctggaataccaggaaatccaggctttcgtggagatgtaggaactgtgggacacccaggt
ctcctaggcctagaagggcccgccggacgtcctggtacttcgggccgtcctggtatgcca
gggcggagtgtcagcgtcgggtacctgctggtgaagcacagtcagtctgatcagactccc
atgtgccctgtgggaatgtccaagctgtgggacggctacagcctgctgtactttgaagga
caagagaaggctcataatcaggacctgggtctggcaggctcctgtctccctcgtttcaac
accatgccgttcctgtactgtaatcccggggatttatgctactacgccagccgaaacgac
aaatcctattggctctccacgactgcccccattcctatgatgcctgtggaggaggaagaa
atcaaaccgtatatcagccgctgttcagtgtgtgaagctccatccgtggccatagctgtg
cacagtcaggacatcactattccacagtgtcccctcggctggagaagcctgtggatcggc
tactctttccttatgcacacggcggctggagatgagggaggtggtcagtctctggtgtct
cctggctcgtgtctggaggacttccgcaccacacccttcatcgagtgtaacggggccaag
ggtacctgtcactacttcgctaacaagaacagcttctggctgacgtccatcaaccagccc
ttccagactactcctgagtcagaaactctaaaagctgggcagcttctctcgcgcatcagc
cgctgccaagtgtgcatgaagaacctgtga
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