Astyanax mexicanus (Mexican tetra): 103034505
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Entry
103034505 CDS
T05042
Symbol
arid1b
Name
(RefSeq) AT-rich interactive domain-containing protein 1B
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
103034505 (arid1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
amex03000
]
103034505 (arid1b)
03021 Transcription machinery [BR:
amex03021
]
103034505 (arid1b)
03036 Chromosome and associated proteins [BR:
amex03036
]
103034505 (arid1b)
Transcription factors [BR:
amex03000
]
Eukaryotic type
Helix-turn-helix
ARID
103034505 (arid1b)
Transcription machinery [BR:
amex03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
103034505 (arid1b)
Chromosome and associated proteins [BR:
amex03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
103034505 (arid1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
CBP110
Motif
Other DBs
NCBI-GeneID:
103034505
NCBI-ProteinID:
XP_049340563
Ensembl:
ENSAMXG00000018182
LinkDB
All DBs
Position
1:complement(83317654..83409764)
Genome browser
AA seq
2129 aa
AA seq
DB search
MGSRREQEQANFGPASGGGGGPSRSASSSVLEFNHYYGNGRGWPCFDQHGGQQSTANSGM
MMHSGQNNMDQMQNSHEEYHNNPYSHYPNYRPGYGAAGYGMMSPSRQGNMMGPGSSSNSS
AASAAAAAAHGKAAPSPVVVGGGGGGVSGGGSAVSGGGGFQRFPGQTQQHPSGATPTLNQ
LLTSPSPMMRGYSSGYQDYSSPTQQQANMGLSKDLSSQYSSTASHGWGGQQRNHPAMSPG
NNGQGGNRSQQMMALCPEFLHLPTVESCARYRQLSKVSPMDAMSMKRSQLYGMDNSPYSQ
QQQQQQTGGGYSTQPYGSPAPHRYPMGMQGRGQVGMAGMQYSQQQQVPAQYGQQGMGGYC
QQGQPPYFSPPQQQPAAPSQPHYMQPRAPPQQDAPQEGYGNRGQPAITPGKPNHDEMGLN
QQDRPSSLPDLSGSIDDLPTGTEAGLSSAVSASGSTSSQGDQSNPAQSPFSPHASPRLSS
LRSGPSPSPVGSPVGSSQSRSGPISPASVPSTQMAPQTPGNVSDVGSHSTLSQSPMSQER
GFASNLQRTGPGSQFGPQQPGPAMSPHPSPGGSMHHSVGSYQQGGATYGPQSGQYGPSGN
YPRPANYGGAPGPSYSGPGPGMSLGMNASSPMHGQGPGQPCGSMPAGRGPGQPASGRPYP
AGSSSVAPTSPNMPQSAGPGMGPPPPTVTRKPHETGPAPCPQNPLASVQARPPYARSPVY
LGLSGPGGRPAPFTSSHFSHPHHVPYGSGLGQPQSEQFGSGGYSGGPSMGGMGPGGLYNQ
PPGSNSNRMSLQGPAYNAMPSGPMAMGAGEGMPPTDPKQRTEHKEESSMASTEQPKPKDS
YSAQCVSQPPTPSPLSPSPASLSSNHGDDSDSISSPAWPKTPTSPKLSSATMTNEKIARL
YEMGTEPERKTWVDRYLAFMEERGTPVPNLPAVGKKPLDLCCLYMCVREIGGLAMVNKNK
KWRELSTVLNVGTSSSSASSLKKQYIQYLFAYECKVERGEEPPPDAFAMGDSKKQQHQAK
VQPPSPANSGSLQGPQTPQSTGSSSMTEMPGDLKPPTPATTPHSQMTPQPSGRSSGVSVQ
DPFSESCDPAFQKRGNVPPGVMYQQSANVGDPSVRMQYDANKEPYGGPRKGGSDPYMPGQ
MPSSGIQDMYPRGPSGGQGMGPRAQYPYSPNFERRPAHAMGPEGGLATPGNQNNVMPSNS
DQSLYSGNRYPSHQRHGHDGYGQQYPQGMPYSAHGMYPQPQGYKRPGEAMYGPSAKRHEG
EGFGMQYSGQQPDMYGQYGSAYPDRRPMQGQFPYQYNRERMQHGGQGPPQHGMMSGGPSS
TPSGAPQGWHPRTEMGFPYTSRQGHGPPYSSMNRADDPDGRANQDSQWPSHPGQRQSPFP
SQSSSSSLPPMTNRQPPASYQSPPSMPNHIARAPSPAPFSRPMGGSMSPNKVHLMPSMKM
PKTGMPGSMPCSQSGGVPVQGLPPIQREITFPLGSVEATQPQLKPRKRLTSKDIGTPEAW
RVMMSLKSGLLAESTWALDTINILLYDDNTVSSFTLSQLPGFLELIVEYFRRCLIEIFGI
LKEYEVGTEGQKTLLGPIQEPTAKKEESESELKELDSHSDPEQPEKKPETASQRPVPSST
SGADASEKKKPAETIDQKGEKDMNARKEKCPSLEPTAKQASKYDRLPIKVEEREAIDDMV
EDRSEQLGLVGDFISGLLHWKAGGGDSTAHIQTHLERKYQERESQASPVKEFEWENEQGL
DSEDCSRVEEEPLKEAQGSTDKNLSAAVVNDVSCFAPPTLPENEAKGFSLRNQENSIPLL
EDEPRCWDEAPLSTAEDWQDELAKRCICISNIVRSLSFVPSNDADMARHPGLVLILGRLV
MLHHEHPKRKRTSPTYQREEERGLACSKDEWWWDCLCALHENTLVTLANISGQLDLSIYP
ESICLPILDGLLHWMVCPSAEAQDPFCTAGGFSSLTPQRLVLECLCKLSIQDCNVDLLLA
TPPLSRQDRLYATLVRHVGERKSQVCREMAVAVLSNLAQGDSTAARSIALQKGSIGTVIG
FLEDSIAMAQYQQSPHSLLHAGHPTHPEPPSINMMCRAAKALLAMAQVEENRPEFVLYES
RLLDITLSSVLNSSVVAVMCEVLFKLGRS
NT seq
6390 nt
NT seq
+upstream
nt +downstream
nt
atgggcagcaggcgcgagcaggagcaggcgaactttggaccagcgagcggcggcggtggt
ggcccgtctcggagtgcgagcagctcggttctcgagtttaatcattattacgggaatgga
agaggatggccttgctttgatcaacatggcggacaacaaagcacagctaactcgggtatg
atgatgcattcgggccagaacaacatggatcagatgcaaaactcgcacgaggagtaccac
aataacccctacagccactaccccaactaccggcccggctacggggccgccgggtacggt
atgatgagcccttcgcggcagggaaacatgatgggcccggggagcagcagcaactcatcc
gctgcctccgctgctgctgccgccgctcacggcaaggctgccccgtcccccgttgttgtt
ggcggcggtggaggaggtgtcagtggtggtggtagtgctgtaagtggtggagggggcttt
cagcggttcccgggacaaactcagcagcatccttcgggggctactccgactctaaaccag
ctcctgacttctcccagcccgatgatgcgaggctacagcagcggctatcaagactacagc
agccccactcagcaacaagccaacatgggactaagcaaagacttgagctcccagtacagc
agcactgcgagccacggctggggaggacagcagaggaatcacccagctatgagtccgggc
aacaacgggcaaggaggaaacagatcccagcagatgatggcactctgccctgaatttctg
cacttgccaaccgtcgagtcctgtgctcgctatcgtcagctcagcaaggtgtcgccgatg
gacgccatgtcaatgaagcgttcccagctgtatgggatggataacagcccttattcccag
caacagcagcagcagcagacaggcggaggctactccacccagccttatggatctcctgca
ccacaccgatacccaatgggaatgcaggggcgtggacaggtcggcatggcagggatgcag
tactctcaacaacagcaggttccagcgcagtacgggcagcagggtatgggcgggtactgc
cagcagggacagcctccgtacttcagccctccacagcagcagcctgccgctccctctcaa
ccccactacatgcagccccgggctcctcctcagcaggacgctccacaggagggttatggt
aaccgaggtcagcctgctataactcctgggaagccaaatcatgatgagatgggtctgaac
cagcaagatcgaccgtccagccttccagacctgtctggctctatagatgacctccccaca
ggtacagaggcaggcctcagctcagcggtcagcgcctcaggctccaccagcagccagggg
gatcagagcaatcccgcccagtcacctttctccccccacgcctcaccccgcctctccagc
cttcgcagtggaccctcgccttccccggtcggctcgcctgtgggctccagccaatcacgc
tccggacccatatcaccggctagtgtaccaagtacacagatggccccgcagacccctggg
aacgtttcagatgtgggctcccattccaccctcagtcagtcccccatgtctcaagagagg
ggatttgcctctaacctgcagcgtactggccctggctcacagtttggtccccagcagcct
gggcctgccatgtccccccacccgtctcctgggggctcgatgcaccacagtgtgggatcc
taccagcagggcggcgctacctacgggccacagagtggacagtatggtccttcaggtaac
tacccacgtccagccaattacggtggagctcctggccccagctacagtggccccgggcca
ggcatgagcctggggatgaacgctagcagccctatgcacgggcagggccccgggcaaccc
tgtggctccatgccggctggaagaggccccggtcagccagcaagcggtcgtccgtaccca
gcaggatccagcagcgtggcccctacctccccgaatatgccccagtctgctgggcctggg
atgggtccccctccacccacggttacccgtaaacctcacgagaccggacctgcaccatgt
ccacagaaccccctcgcatccgtccaggccaggcctccatatgccaggtcccctgtatac
ctaggactatctgggccaggggggagaccggcccccttcacttcctcacatttttctcac
ccgcatcatgttccatacggcagtggcctgggtcagcctcagtccgagcagtttgggtca
ggcgggtactcaggaggaccctctatgggtggaatgggccctggtggcctctataaccag
ccgccgggcagcaactccaacaggatgagcctgcagggtcctgcatacaacgccatgccc
tctggacccatggccatgggggcaggagaaggcatgccgcccactgacccgaaacagaga
actgagcacaaagaggagagcagcatggcgagcacagaacagcctaaacctaaggacagc
tacagcgctcagtgtgtgtctcagccccccaccccgtcccccctctcccccagccctgcc
agcctctcctccaatcacggagacgacagtgacagcattagcagcccagcctggccaaaa
acacccaccagccctaagctcagctcagccaccatgacgaatgagaagatagcgcgtctg
tatgaaatgggcacagagccagagcggaagacgtgggtggaccgctacctggccttcatg
gaggagagaggcacccctgtacccaacctgcctgctgtggggaagaagcctctggacctg
tgctgcctttacatgtgtgtgcgggagatcggagggctggcgatggtgaataagaataag
aaatggcgtgagctctccactgtccttaatgtgggtacatccagcagctcagccagttct
ctaaagaagcagtatatccagtacctctttgcctacgagtgtaaggtggagcgtggagag
gaacccccgccggatgccttcgccatgggggacagcaagaagcagcagcaccaggccaag
gtccagcctccatcaccagcaaactctggatctctccagggacctcagactccgcagtca
acagggagcagctccatgacagaaatgcctggagatttgaagcccccaactccagcaacc
actcctcacagccagatgacaccgcagccgagtggcaggagcagtggtgtgagtgtgcag
gatcccttctcggaaagctgtgaccctgctttccaaaagcggggcaacgtgccccctggt
gtgatgtatcagcagagtgcaaacgttggagatcccagtgttcgaatgcagtacgacgcc
aacaaggaaccctatggaggtccacgaaagggtggcagtgatccttacatgccaggacaa
atgcccagcagtggcatacaggacatgtacccacgtggaccctctggagggcagggtatg
ggcccacgtgcccagtatccttacagcccaaactttgagagaagacctgcccatgcgatg
ggtccagagggtggattggcaacccctgggaatcagaacaacgtgatgccttccaacagt
gatcaaagcttgtactcaggcaataggtacccctctcatcagaggcatggacatgatggt
tatggccagcagtatccccaaggcatgccgtacagtgctcatggaatgtacccacagcca
cagggctacaagaggcctggggaagcgatgtatggtccctcagcaaaacggcatgagggt
gaaggctttggaatgcagtacagtggccagcaaccagacatgtacggccaatatggtagt
gcatacccagatcgcagacccatgcagggtcagttcccgtaccagtataaccgtgaacgc
atgcagcacggaggacagggtcccccccagcacggcatgatgagcggaggtccatcgtcc
actcccagcggagcacctcagggttggcaccccaggactgaaatgggcttcccatacaca
agcagacagggccatggacccccatattcctccatgaaccgcgcagatgacccagatggc
agggcaaatcaggacagtcagtggccaagtcaccctgggcagcgccagtcaccttttccc
tcccagtcctcctccagctccttgccccccatgacaaaccgtcaacctccggcctcatac
cagtctcctccatccatgcccaaccacatcgcacgtgctccaagcccagcgcccttttct
cgtcccatggggggttccatgtcccccaataaagttcatttgatgccgtctatgaagatg
cccaagacagggatgcctgggtccatgccatgctctcagagtggtggtgttccagtccaa
ggccttcctcctatccaacgagagatcactttccctctgggttccgttgaagctacacag
cctcagttgaaacctcgtaagaggttgacttccaaagacattggaacaccagaggcttgg
cgtgtgatgatgtctctgaagtctggtttgctagcagaaagcacttgggccttggatacc
ataaacatcttactgtatgatgataacacagtgtcatcctttaccctttcacagctgcca
ggtttcttggaactcatagtggagtatttcagacgatgtttgatcgagatcttcggtatc
ctgaaggagtacgaagtgggtacagagggccagaaaacacttctcggtcccattcaggag
ccgacagccaaaaaggaggaatcggaatctgagctcaaggagctggacagccattcagat
cccgagcagccagagaaaaagccagaaacagcgtctcaaaggcctgtccccagcagcaca
tctggagcagatgcttcagaaaagaagaaaccagcagagacgatcgatcaaaaaggagag
aaggacatgaatgcgaggaaagaaaaatgtccttccttagaaccaacggccaaacaagcc
agcaagtatgaccgactgccaataaaggtggaggaaagggaggcaatcgacgacatggtg
gaagaccgatcggagcagctaggtcttgttggagattttatcagtggcttgctgcactgg
aaggctggaggtggagactccacagcacacattcagactcacttagaaagaaagtatcag
gagagagaatctcaagcctcgcctgtaaaggagtttgaatgggaaaacgaacaaggcctg
gacagtgaggactgcagtagggtagaagaggaacctcttaaagaagcccaaggttcgaca
gacaagaacctttcagctgctgtggtgaatgatgtatcatgttttgctccaccgacgcta
ccagagaacgaggctaaaggtttctctttacgaaaccaagagaacagcatccctttgctg
gaggatgagcctcgatgctgggatgaggcaccgctctccacagctgaggattggcaggat
gagcttgccaagcgctgcatctgcatctccaacatagtccgtagcctctcgtttgttcca
agtaacgacgctgacatggcacgccacccaggcctggtgcttatactgggcaggctggtg
atgttgcaccacgagcacccaaagcgtaaaaggacatcacccacctaccagcgcgaggag
gagcgaggcctggcctgtagcaaagacgagtggtggtgggactgtctctgtgccttgcac
gaaaacaccttggtcaccttggctaacatttcagggcagctagatctgtcgatttatcct
gagagcatctgcttgcccatcctagacgggcttctgcactggatggtgtgtccatcggcg
gaggcccaggaccctttctgcacagcgggcggcttctcgtcactgacgccgcagaggctg
gtgctggagtgcttgtgcaaactgagcatccaggactgtaacgtggatctgctcctggcc
acgccgccgctcagccggcaggatcgtctctacgcaacgttagtgcgccacgttggtgag
cgcaagagtcaggtgtgccgcgagatggcggtggccgtcctctccaacctggcgcagggc
gactccacagcagctcgctccatcgcccttcagaagggcagcatcggcacggtgatcggc
tttttagaggacagcatcgccatggcgcagtatcagcagagcccccacagcctcctgcac
gccggacacccgacgcacccggagccgcccagcatcaacatgatgtgccgggctgctaaa
gccttgctggcaatggctcaggtggaggaaaaccggcccgagttcgttctgtacgagagc
cggctgctggacatcactctgtcgtctgtgctgaactcgagcgtagtagccgttatgtgc
gaggtattgttcaagctcggacgctcgtga
DBGET
integrated database retrieval system
