Astyanax mexicanus (Mexican tetra): 103034649
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Entry
103034649 CDS
T05042
Symbol
polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03020
RNA polymerase
amex03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
103034649 (polr2b)
09124 Replication and repair
03420 Nucleotide excision repair
103034649 (polr2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amex03021
]
103034649 (polr2b)
03400 DNA repair and recombination proteins [BR:
amex03400
]
103034649 (polr2b)
Enzymes [BR:
amex01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
103034649 (polr2b)
Transcription machinery [BR:
amex03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
103034649 (polr2b)
DNA repair and recombination proteins [BR:
amex03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
103034649 (polr2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
103034649
NCBI-ProteinID:
XP_022532139
Ensembl:
ENSAMXG00000004040
LinkDB
All DBs
Position
19:1745259..1762494
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDQDEDIQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTAECRSCLENSSRPTSSIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEVLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPKREECQGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKLTSQIFVGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRLPYACKLLFQELMSMSIAPRMMTS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtatgatcaggatgaagatatccagtatgatgaagatgatgatgaaatcaccccagat
ctgtggcaggaagcctgctggattgttatcagctcctactttgatgagaagggcctggtg
cgacagcagctggactcatttgatgagtttattcagatgtctgttcagaggatcgtggag
gatgctccacccatagacctacaggctgaagctcagcacacctccggagaggtggaggaa
ccgcctcggtatctgctgaagtttgagcagatctatttgtccaaaccaacacactgggaa
agagatggagctccatcacccatgatgcccaatgaggccagactccgaaacctcacgtac
tcggctcctctgtacgtggacatcaccaagaccatcataaaggagggagaggagcagctt
cagacgcagcaccagaaaaccttcatcggcaaaattcccatcatgctccgctccacctac
tgtctcctcagcggcctgacggaccgtgatctctgtgagctgaacgagtgtcccctggac
ccggggggctacttcatcatcaacggctccgagaaggttcttatcgctcaggagaagatg
gccactaacacggtgtatgtgtttgcaaaaaaggactctaagtatgcgtacacggccgag
tgcaggtcctgcctggagaactcctccagacccaccagctccatctgggtcagcatgatg
gccagaggaggacagggagtgaagaagagcgctatcggtcagagaattgtctctacgctg
ccgtacatcagacaggaagtgcccatcatcatcgtgttcagagctctgggatttgtgtcc
gacagggacatcctggagcacatcatctacgactttgatgacccagagatgatggagatg
gtgaagccgtctctggacgaggccttcgtgatccaggagcagaacgtagctctgaacttc
atcggatccagaggagccaaacctggagtcaccaaggagaggaggattaaatacgctaaa
gaggttctgcagaaagaggttctgccccatgtgggagtttctgacttctgtgagacaaag
aaagcctactttttaggttatatggtgcacagactgctgctggcagctctgggcagaaga
gagctggatgacagagatcattacggaaacaaaaggctggacctggccggccctctgctg
gccttcctcttcagaggaatgtttaagaacctgctgaaggagatcaggatctacgcacag
aagtttatcgaccgggggaaggactttaacctggagctggccatcaaaacccgcatcatc
tctgatgggctgaagtattctctggccacgggcaactggggcgatgtcaaaaaggctcac
caggccagagctggagtgtctcaggtgttgaacagactgacgttcgcctctacgttatca
cacttgcggcgtgtaaactctcccatcggccgagacggaaagctggccaaacccaggcaa
ctccacaacacactgtggggcatggtgtgccccgccgagaccccagagggtcacgctgta
ggtctggtgaagaaccttgcactcatggcctacatctctgtcgggtctcaaccttccccc
atcctggagttcttggaggagtggagcatggagaacctggaggaaatctcacctgcagcc
attgcagatgctactaagatctttgtgaacggctgctgggtgggcatccacaaagatcct
gaacagctgatgaacaccctgaggaagctgaggagacagatggacatcattgtgtctgag
gtgtcgatgatccgagacatcagagagcgagagatccgtatttatacagatgctgggcgt
atttgcagacctctgctgatcgtggagaagcagaagctcttgctgaagaggcgccacatc
gatcagctgaaagagcgagagtacaacaactacagttggcaggacctggtggcgagcggg
gtggtggagtatattgatacgctggaggaagagacggtgatgctggccatgactccagat
gatctccaggagaagggtgtggcctattgctccacctacacacactgtgagatccacccc
tcgatgatcctgggagtgtgtgcatccattataccgttccccgatcacaatcagtctccc
aggaacacgtaccagtctgctatggggaagcaggctatgggagtctacatcaccaacttc
cacgtacgtatggacaccctggcccacgtgctgtactacccccagaagcctctggtcacc
acgcgctctatggagtacctgcgcttccgagagctgccagcaggcatcaactccattgtg
gccattgcctcgtacactggctacaatcaggaggactctgtcatcatgaaccgctccgct
gtggaccgaggattcttcaggtctgtgttctaccgctcctataaagagcaggagtctaag
aaaggctttgatcaggaggagatcttcgagaagcccaagcgtgaggagtgtcaaggcatg
cggcatgcgatctacgataagctggatgatgacgggctgatcgcgccgggcgtgcgagtg
tccggtgaggacgtgataatcggtaaaacggtcactctgcccgagaacgacgacgagctg
gacagcacgaaccgccgctacaccaagagagactgcagcactttcctccgcaccagtgag
accggcatcgtcgaccaggtcatggtcaccctcaaccaggagggctacaagttctgcaag
atcagggttcgttcagtccggatccctcagatcggggataagtttgccagtcgtcacggg
cagaaaggaacctgtggaattcagtacaggcaggaggacatgccttttacgtgtgaggga
atcacccccgacatcatcatcaacccccacgccatcccctccagaatgacagttggtcac
ttgatcgagtgtctgcaggggaaggtttctgcaaacaaaggggagattggtgacgccacg
ccgtttaacgacgccgtgaacgtgcagaaagtctccaacctgctgtctgagtacggctac
cacctgagaggaaacgaggtgctgtacaatggtttcacaggtcgcaaactgacctctcag
atcttcgtcggacccacttactaccagcgactgaagcacatggtggacgataagatccac
tcgcgagctcgcggccccgtccagatcctcaacaggcagcctatggagggcagatcacgt
gatggtggtctgcgtttcggagagatggagcgagattgtcagatagctcacggagcagca
cagttcctgagggagcgtctgttcgaggcgtccgacccctaccaggtgcacgtgtgcaac
ctgtgcggactaatggccatcgccaacacgcgcactcacacttacgagtgcaggggctgc
agaaacaagactcagatttctctggtccggctgccgtacgcctgtaagcttctgtttcag
gagttgatgtctatgagtattgctcctcgtatgatgaccagctga
DBGET
integrated database retrieval system
