KEGG   Astyanax mexicanus (Mexican tetra): 103035117
Entry
103035117         CDS       T05042                                 
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4
  KO
K07573  exosome complex component CSL4
Organism
amex  Astyanax mexicanus (Mexican tetra)
Pathway
amex03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:amex00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103035117 (exosc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:amex03019]
    103035117 (exosc1)
Messenger RNA biogenesis [BR:amex03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     103035117 (exosc1)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     103035117 (exosc1)
SSDB
Motif
Pfam: EXOSC1 ECR1_N OB_PDCD11 S1_RRP4 S1_TP0910
Other DBs
NCBI-GeneID: 103035117
NCBI-ProteinID: XP_022530220
Ensembl: ENSAMXG00000011116
UniProt: A0A3B1JED1
LinkDB
Position
21:complement(35410251..35420300)
AA seq 194 aa
MSPMKLCVPGERLCSTEDCIPGAGTYLRHGYIFASLAGYVLRRNEGEELPVISVVRETEA
QLLPDVGAIVTCKVTSINPRFAKVHILYVGSTPLKDRFRGTIRKEDVRATEKDKVETYKS
FRPGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSEAGAQMVPISWCEMQCPRTHNKE
FRKVARVQPEYLQA
NT seq 585 nt   +upstreamnt  +downstreamnt
atgtcgcccatgaagctgtgtgttccaggtgaaaggctgtgcagtacggaggactgtatc
cccggggcaggaacgtatctgaggcatggctacatcttcgcctcgctcgctggatacgtg
ctcaggaggaacgagggcgaggagcttcctgtgatttctgtcgtcagagaaacagaagca
cagctcctgcctgacgtcggcgctatcgtcacctgcaaggtgacgagtattaacccgcgg
tttgccaaggtgcacatcctctacgtcggctccaccccccttaaagaccggttcagagga
accatcaggaaagaagacgtgagagccaccgagaaagataaggtggaaacgtataaaagc
ttcaggcctggtgacatcgtcctcgccaaagtgatctcgctgggagacgtgcagtcgaat
tacctgctgaccacagcggagaacgagctgggtgtggtcgtggcccacagtgaagcagga
gctcagatggtgcccatcagctggtgtgagatgcagtgcccacgcacccacaacaaagag
ttccgcaaagtggcacgggtacagccggagtacctgcaggcctga

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