KEGG   Astyanax mexicanus (Mexican tetra): 103035288
Entry
103035288         CDS       T05042                                 
Symbol
vps41
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
  KO
K20184  vacuolar protein sorting-associated protein 41
Organism
amex  Astyanax mexicanus (Mexican tetra)
Pathway
amex04140  Autophagy - animal
amex04142  Lysosome biogenesis
amex04148  Efferocytosis
amex05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:amex00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04142 Lysosome biogenesis
    103035288 (vps41)
   04140 Autophagy - animal
    103035288 (vps41)
   04148 Efferocytosis
    103035288 (vps41)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    103035288 (vps41)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:amex04131]
    103035288 (vps41)
Membrane trafficking [BR:amex04131]
 Endosome - Lysosome transport
  Tethering complex
   Hops complex
    103035288 (vps41)
SSDB
Motif
Pfam: TPR_Vps41 Beta-prop_Vps41 zf-RING_Vps41 Clathrin WD40_CDC20-Fz zf_RING_Vps8_fungal VPS18_solenoid_2nd Beta-prop_RIG_2nd TPR_7 Beta-prop_HPS5 Vps39_1 Beta-prop_IFT122_1st WD40_WDHD1_1st Beta-prop_EML_2 TPR_19 WD40_Prp19 TPR_YpiA zf_RING_Vps8 Beta-prop_THOC3 TPR_17 TPR_PEP5_VPS11 Beta-prop_WDR3_1st CFAP251_N TPR_GEMI5 zf-C3H2C3 Helicase_PWI MIB_arm VPS18_RING_C
Other DBs
NCBI-GeneID: 103035288
NCBI-ProteinID: XP_022522730
Ensembl: ENSAMXG00000002875
LinkDB
Position
1:complement(103242221..103285613)
AA seq 854 aa
MSELEEKERKPSEESTDDSEEEDSEEEPKLKYERLANGVTEILQTDAASCMTVHDKFLAL
GTHFGKVFLLDVQGNVTQKYEISSVKINQISLDESGEHVGICSEDGKVQVFGLYTREGFH
ESFDCPIKVVALHPQFSKSNNKQFITGGNKLLLYERNWLNRWKTSTLHEGEGSITNIKWR
ANLIAWANNVGVKIYDISTKQRITNVLRDNTCLRPDMYPCSLCWKDNTTLIIGWGSSVKI
CSVKERDPTEMRDLPSRYVEIVSAFETEFFISGLAPLADQLVTLYYVKENSDHMEEEFRA
RPRLDIIQPLPESCEEISSDALTVRNFQENECRDYRLEHSEGESLFYIISPKDIVVAKER
DQDDHIDWLLDKKKYEEALMAAEISFKNIKRHDVQKIGMAYINHLVEKGDYDTAARKCQK
VLGKNMDLWENEVYRFKTIGQLKAISQYLPRGDLRLRPAIYEMILHEFLMTDYEGFATLI
REWPGELYNNMTIVQAVTNHLKKDPTNSILLTTLAELYTYDQRYDRALEIYLRLRHKDVY
QLIHKHNLFSSIEDKIVLLMDFDKEKAVDMLLDNEDKISTDRVVEELKDRPELLHVYLHK
LFKRDHHKGQKYHEKQISLYAEYDRPNLLPFLRDSTHCPLEKALEICQQRHFVEETVFLL
SRMGNCRRALQMIMEELGDVDKAIEFAKEQDDAELWEDLISYSIDKPPFITGLLNNIGTH
VDPIILIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLHKMHRTQM
RGVRVDEENICEACHVTILPSDTAQPFSVVVFHCRHMFHKECLPSQGTIPGVQYCNICSA
KRRGPGSGILDMKK
NT seq 2565 nt   +upstreamnt  +downstreamnt
atgtcggaactggaggagaaggagagaaaaccaagtgaggagtccacagatgattcagag
gaagaggacagtgaggaggagcctaaattgaagtacgagcggctggccaatggggtgacg
gagatcctgcagacggatgcggctagctgcatgactgtacatgacaagttcctggctctg
ggcactcacttcgggaaggtgtttcttctggacgttcaaggaaacgtcacccagaagtac
gaaattagttcagtgaagataaatcagatcagtttggacgagagtggggagcatgtaggg
atctgctcagaggatggaaaggtgcaggtgtttggcctctacacccgggagggcttccac
gagagctttgactgtcccatcaaagtggtggcattgcaccctcagttcagcaagtcaaac
aacaagcagttcataaccggaggaaacaagttgttgctgtatgagagaaattggctgaac
cgctggaagacgtccactctgcatgaaggagaggggagcatcactaatatcaaatggaga
gccaacctcatcgcctgggctaataatgtgggagtgaagatctatgacatcagcactaag
cagcgcattacaaacgtgttacgggacaacacctgtctgaggcctgatatgtacccctgc
agcctctgctggaaagataacactacgctcatcattggctggggatcctcagtgaagatt
tgctctgtgaaagagcgtgaccctaccgagatgagagatttacccagccgctacgtcgag
attgtgtcagcatttgagacggagttctttatcagtggactggctcctctagctgatcag
cttgttactctgtactacgttaaagagaattccgaccacatggaggaggagtttagggca
cgaccacggctggacattattcagccactgccagagagctgtgaggagatttcttcagat
gctctgacagttcgcaactttcaggagaacgagtgccgggactacagactggaacattct
gaaggagagtctctgttctacatcatcagccctaaagacatagtggtggctaaagaacga
gatcaagacgatcatattgactggctgctcgacaagaagaaatatgaggaggcactgatg
gcagctgaaatcagcttcaaaaacatcaagagacatgatgttcagaaaattggaatggcc
tacatcaatcacctggtggagaaaggagattatgacacagcggccagaaagtgtcaaaaa
gtgctgggcaagaatatggatctttgggagaatgaggtgtaccggttcaaaaccattgga
cagttgaaggccatcagtcagtatttacccagaggagaccttcgtctcagacctgccatt
tatgagatgatcctgcatgaattcctcatgactgactatgagggttttgctacactgatc
cgtgagtggccaggagaactgtacaacaacatgacaatagttcaggctgtgacaaaccat
ctgaagaaggaccccaccaacagcatcctgctcaccacactggctgaactatacacgtat
gatcagcgctatgaccgagcactggagatctacctgaggctcagacacaaagacgtctac
cagctcatccacaagcacaacctgttctcctccatcgaggataagatcgtcctcctaatg
gactttgataaggagaaagctgttgacatgctgctggataatgaagataaaatatcgacg
gacagagtggtggaagagctgaaagacagacctgagcttttgcatgtgtacctgcacaag
ctgtttaagcgagatcatcacaagggccagaaataccatgagaagcagatcagtctgtat
gcagagtacgacagacccaacctgctgcccttcctcagagacagcacccactgcccactg
gagaaagcactggagatctgccagcagaggcactttgttgaagagacagtgtttttactc
agccggatggggaactgcagacgggctctccagatgataatggaggagctgggagatgtg
gataaagccatagaatttgctaaagagcaggatgatgctgaactctgggaggatctgatc
tcctactctatagataaaccacccttcatcacagggttgcttaataacataggaactcat
gtggaccccattatcctgatccaccgcattaaagaaggcatggagatccccaatctcaga
gattctctggtcaaaattctgcaagactataatctacagatcttgttgcgggagggctgt
aagaagatcctggtagcagactcgctatcactgctgcataagatgcacagaacgcagatg
agaggtgttcgcgtagacgaggagaatatctgcgaagcatgccatgtcacaatattacct
tcagacacagcccagcccttcagtgtggtggtgttccactgcaggcacatgttccacaaa
gagtgcctcccctcacaaggaactatcccaggagttcagtactgcaacatctgtagtgct
aagagaagaggccctggcagtggaattctggacatgaagaaataa

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