Astyanax mexicanus (Mexican tetra): 103035437
Help
Entry
103035437 CDS
T05042
Symbol
rnf220a
Name
(RefSeq) E3 ubiquitin-protein ligase RNF220a isoform X1
KO
K25174
E3 ubiquitin-protein ligase RNF220 [EC:
2.3.2.27
]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
amex04121
]
103035437 (rnf220a)
Enzymes [BR:
amex01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
103035437 (rnf220a)
Ubiquitin system [BR:
amex04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
103035437 (rnf220a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNF220
zf-C3HC4_2
zf-RING_5
zf-Nse
Motif
Other DBs
NCBI-GeneID:
103035437
NCBI-ProteinID:
XP_007229365
Ensembl:
ENSAMXG00000012286
UniProt:
A0A8B9RE84
A0A3B1IRV6
LinkDB
All DBs
Position
8:47826719..47971345
Genome browser
AA seq
689 aa
AA seq
DB search
MDLHRAAFKMESSSYLPNPLASPALMVLASTAEASVRDASIPCQGPRPFGAPSSAEKDVH
LPFGNGSYTFASMYHRQGAVPTFANRDFPPSLLHLHHQFAAPPPNLDCSPLGMLNHSGVG
AFRPFASPPEDRDHQASSGAYQSAFTPAKRLKGCLEADASPHLRYSDAEGKEYDYAGAQI
ASASPGALKAAEDGKKIFAVSGLLSDRETSSSPEDRIERCKKKVSLYDSQAPICPICQVL
LRPGELQEHMEQEMERLTHLHISKNPSHKDITTAPGTPKSLLLSVHIKREGESPVISPLS
SDDAHHSDRYQTFLRVRANRQTRLNVDDLCWCRRYGKERIKSSPTPVPRGVPLAPCCLQY
ARIGKMKRRKPEDGQVCPLCSAPLEGTGEEMNRHVEECLLKREGAIEEDQADMEGENGTR
FEEYEWCGQKRVRATSLLEGGFRGTGFAMCTTKESHDSDADLDVDGDDTLEYGKAQYTEA
DIIPCSGEDQGETKEREALRGAVLNGGMPSNRITPEFSKWASDEMPSTSNGECSKQEAST
STVPRTCKNSEIEKITEDSTGTTLEALKARIRELEKQILRGDRYKCLICMRKRFPTGPDG
KGGGPTRHGGAEAPPLGSGCCFYRGFIPGSSAIKRLLPLRRDSYTAPLTSIQCWHVHCEE
CWLRTLGNKKLCPQCNTITSPGDLRRVYL
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggacctgcaccgggccgccttcaagatggagagttcatcctacctccccaatcccctg
gcctctccagcgctcatggtgctggcgtccacagcggaggcaagtgtccgtgatgcctcc
attccctgccagggaccacggccatttggtgctccttcctcagcagagaaggatgtgcac
ctgccttttggtaatggctcttacacttttgcttctatgtaccatcggcagggtgccgta
cccacctttgccaatcgtgacttcccaccctcgctgctccacctacaccatcagtttgct
gcacctccacccaacctggactgctcacccctgggcatgctgaaccacagcggcgtgggc
gccttccggccctttgcctcaccgccagaggatcgtgaccatcaggcctcctcgggtgca
tatcagtcagccttcacccccgccaagcgcttaaagggctgcctggaggccgatgcctcg
ccccatctgcgctactcggacgctgagggcaaagagtacgactacgccggtgcccagatt
gcctctgcctcacccggcgccctgaaggctgccgaggatggcaagaagatctttgcagtg
tccggcctgctgtcggacagagagacttcgtccagcccggaggaccgcatcgaacgctgc
aagaagaaggtgtctctgtatgacagccaggctccgatctgtccgatctgtcaggtgctg
ctgcgccctggagaactgcaggagcacatggagcaggagatggagaggctcacccatttg
cacatcagcaagaacccatcacacaaggacatcaccacagcacccggcacacccaagtct
ctcctgttgtcagtgcacatcaagcgtgagggcgagtctccagtcatctctccgctctct
tcagacgacgctcaccattctgacagataccagaccttcctacgggtccgggccaaccgg
cagacacgactcaacgtcgatgacctctgctggtgcaggcgctacggcaaggaacgcatc
aaaagctcccccaccccagtgccccgaggtgtgcccctagctccatgctgccttcagtac
gcccggattggaaagatgaagcgacggaagccggaagatgggcaggtatgtccactgtgc
agcgccccgctggaagggactggggaggaaatgaataggcatgtggaagagtgtcttttg
aagagggaaggagccatagaggaagaccaggctgacatggagggggaaaacggcacccgc
ttcgaggagtatgagtggtgtgggcagaagagggtgcgagccacgtctctgctggaggga
ggctttagaggaacaggctttgccatgtgcactacaaaggagagccacgacagcgatgct
gacctggacgtggatggagacgacacactggagtatggcaaagcacagtatactgaggcg
gatattattccctgttctggagaagatcaaggggagaccaaagaacgcgaggcactacgt
ggggctgtgctgaatggcggtatgccatccaacaggataacgccagaattctcaaagtgg
gccagcgatgaaatgccgtccaccagcaatggcgagtgcagcaaacaggaggcctcgaca
tccaccgtgcccaggacctgcaaaaacagcgagatcgagaaaatcacagaggactccaca
gggaccacactggaggcgctgaaggcacgcatcagagaactagagaagcagattctcaga
ggagacagatacaagtgtcttatctgtatgcggaagcgattcccaacagggcccgacggc
aagggcggggggccgacgaggcacggtggcgcagaggccccgcccctgggctctggctgc
tgtttttacagaggcttcatcccaggcagcagcgcgattaagaggctactgccactccgg
agggactcgtacacagcgcctctcacctccatccagtgctggcacgtccactgtgaagaa
tgctggcttaggactttgggaaacaagaagctctgcccacagtgcaacaccatcacttca
ccaggggacctccgacgtgtttacttgtga
DBGET
integrated database retrieval system
