Astyanax mexicanus (Mexican tetra): 103035450
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Entry
103035450 CDS
T05042
Symbol
smarcad1a
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1A isoform X1
KO
K14439
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 [EC:5.6.2.-]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
amex03036
]
103035450 (smarcad1a)
Chromosome and associated proteins [BR:
amex03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
103035450 (smarcad1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
CUE
HHH_3
UBA_8
T2SSK
HHH_5
Motif
Other DBs
NCBI-GeneID:
103035450
NCBI-ProteinID:
XP_022526819
LinkDB
All DBs
Position
12:38460649..38478354
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AA seq
1004 aa
AA seq
DB search
MSLFNLERFRFQKENTSEKLPSSPARLPKPEQRRVLSGSDKENYPARLVKPDGRRGPGKI
PRHALDDVSSEDEVVRKVQSAVQTKKNSESEKQISDELEDKLDKLLEMFPQRSRSELLEV
LEETSTLEGAVAQCLVVYGDKDSNKVERTSTCSDHCDVQAKKRRKTVISDSESESDSESE
SDPDSEEEEEEEEAEEGEGQEPSSMQQEALVHKMKKEIPEYENDVLRDVLREHNWNLQNA
LGSLLLFSSGTGDSSFEIAQEKKTKSSKKSAKNIQESKRKVKQKTDSSLSRWLSTVSKNS
HQKVQNISKGSAPTKTKTASSNHTRRKEEKLEVLQNSDDSDGEEELEGEVGSDSDFDSDA
EDYSFDDKTKEQVLKFLQEASLDELALISGCSLKKAQKIIEMRPYKRWQDLNEPFSRANG
LSMDLVDGCKLVLKERQVLKQLMGRCESIAKKMTKDVAGVIKNGTCSMKQPSVLNPKFKL
QQYQLIGLKWLILLHQHNLSGILADEMGLGKTIQAISFLAYLLQKGNKGPHLITVPSSTL
DNWVRELELWCPSLKVIVYYGSVEDRKYLRHDILNGRVDFNVIVSTYNLTIGNENDRSLF
RKLKLNYAVFDEGHMLKNMNSLRYRHLMSINAEHRLLLTGTPLQNNLLELISLLNFIMPS
MFSSSTSQISKMFSTKSSEEESSFHKERIAQAKLIMKPFILRRVKSEVLKQLPAKFEKIE
MCPMSDAQQQLYEELWKRAKSNAVPGQKRDICNVMMQLRKMANHPLLHRQYYTTEKLAAM
SQAMLKEPTHFDANPALIQEDMEVMSDFELHNLCKEFSSISSYQLDKKLLLDSGKFSLLT
RLLAELKEKGDRVVLFSQFTMVLDIVEVLMEHLGHEYVRLDGSIPMAERIGLIDKYNTDP
EVFVFLLSTRAGGQGINLASANTVIIHDIDCNPFNDKQAEDRCHRMGQTRSVQVIKLVSK
DTIEACMLRVGQEKLKLEQDMTTEDDEGSMTEDMAELLKASLGL
NT seq
3015 nt
NT seq
+upstream
nt +downstream
nt
atgagtttatttaatctcgaaagattccgctttcagaaagaaaacacgagcgaaaagctc
ccatcctccccggcccggctccccaaacccgagcagcgcagagtgctgtccggctcggat
aaagagaattacccggcacgtttagtgaaaccagacggcagacgaggtccaggcaaaatt
ccacgacatgccctggatgacgtgtcctctgaagatgaggtggttaggaaagtccagtct
gctgtacaaacgaagaaaaattcagaatctgaaaagcagatcagtgatgagttggaggat
aaacttgacaaacttcttgaaatgtttcctcagaggagcagaagtgaattgctggaggtg
cttgaggaaaccagcacactagagggagctgttgcacagtgcttagtggtttatggagac
aaagattcaaataaagtggaaaggacatcaacatgcagtgatcattgtgacgtgcaagcg
aagaagcggcgaaaaactgtgatatctgattctgagtctgagtctgattctgagtctgag
tctgatcctgactctgaggaggaggaggaggaggaggaggcggaggagggggagggtcag
gagccaagcagtatgcaacaagaagctctagtgcacaaaatgaaaaaggaaatacctgaa
tatgaaaatgatgtgctaagggatgttttaagagaacataactggaatctccagaatgcc
ttaggatcattactcttgttctcatcaggaacaggagattcaagttttgaaatagcacag
gagaaaaaaacgaaatcttcgaaaaagtcagcaaagaacattcaagagagcaaaagaaaa
gtaaagcaaaagacagattctagtctttcaagatggctgtcaactgtttccaaaaactcc
caccaaaaggtccaaaacatctcaaaaggatcagcacccacaaaaaccaaaacagcaagt
agcaaccatacaagaagaaaagaagaaaagttggaagtgctgcaaaacagtgacgactca
gatggtgaagaagagcttgagggtgaagttggaagcgattctgattttgactctgatgct
gaggactatagctttgatgacaaaactaaggaacaagtgttaaaatttctccaagaggcg
tcattagatgaactggcattgatctctggatgttcgctgaagaaggcccagaagatcatt
gagatgagaccttataaaagatggcaagacttgaatgagccgttctctagggctaacggc
ctgtctatggacctggttgatggatgtaagttggtgctgaaagagagacaggtgctgaag
cagctcatgggccgatgtgaaagcatagccaagaagatgaccaaagatgtcgctggggtc
attaagaatggcacgtgctcaatgaagcaaccatctgttctcaacccaaagtttaaattg
cagcagtaccagttaattggcttgaaatggcttatcctccttcaccagcataatctaagt
ggaattctagctgatgaaatgggtttgggaaagacaattcaggccatttctttcctagct
tacctccttcagaaggggaataagggaccccatcttattacagtgccttcttccactttg
gataactgggtgagagagctagagctgtggtgcccaagcctcaaagtaattgtttactat
ggctctgtggaggaccgtaaatacctcaggcatgacattctgaacggtcgagtggacttt
aatgtcatagtgtctacatataacctcactatagggaatgaaaatgaccgcagtctcttt
cgcaagttgaagctgaattacgcagtgtttgatgaaggtcacatgctgaagaacatgaac
tccctgcgataccgccatctcatgtccattaatgctgagcacagattgctgctgacggga
actcctctacagaacaacctgctggaactaatatctctgctcaacttcatcatgccctcc
atgttctctagcagcacctcacagatctcaaagatgttttccacgaaatcatcagaagag
gagagtagtttccataaggagcgtattgcacaagccaagctcatcatgaagcccttcatc
ctaagacgagtcaagagcgaggtgctgaaacaacttccggccaagtttgagaagatagaa
atgtgtcccatgagtgatgctcaacagcagctctacgaggaactctggaagagggccaag
agcaatgctgtccctggacaaaagcgtgatatttgtaatgtgatgatgcaactcaggaaa
atggccaatcaccctctgctgcatcggcagtactacaccactgagaaacttgctgcaatg
agtcaagccatgctgaaggagccaacacattttgacgcaaaccctgcactgatccaggaa
gatatggaggtcatgtcagactttgagcttcataacctctgtaaggagtttagctcgatc
agcagctaccagctggacaagaagctcctcttggactctggaaagttctccctgctaacc
aggctcctggctgagctcaaagagaagggtgaccgggtggtgctctttagccagtttact
atggtgctggacattgtagaagttctgatggaacaccttggtcatgagtatgttcgactg
gatggctctatacctatggcagaaagaattggcctaatagacaaatacaacacagaccct
gaggtatttgtcttcctactgtctactcgtgctggaggccagggaatcaaccttgcctct
gctaacacagtgatcatccatgatattgactgcaatcctttcaatgacaaacaagcagaa
gaccgctgtcatagaatgggacagaccaggtctgtacaagtaattaaacttgttagcaaa
gacaccatagaggcctgcatgcttcgtgtgggccaggaaaagctcaaacttgaacaagac
atgactactgaagatgatgagggctctatgactgaggatatggcagagctgcttaaggca
tcgctgggcctttga
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