Astyanax mexicanus (Mexican tetra): 103035812
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Entry
103035812 CDS
T05042
Symbol
smarcc1b
Name
(RefSeq) SWI/SNF complex subunit SMARCC1b
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
103035812 (smarcc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amex03021
]
103035812 (smarcc1b)
03036 Chromosome and associated proteins [BR:
amex03036
]
103035812 (smarcc1b)
Transcription machinery [BR:
amex03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
103035812 (smarcc1b)
Chromosome and associated proteins [BR:
amex03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
103035812 (smarcc1b)
PBAF complex
103035812 (smarcc1b)
GBAF(ncBAF) complex
103035812 (smarcc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
SWIRM-assoc_3
Myb_DNA-bind_6
BRCT
DUF919
SpeFL
BRCT_2
Motif
Other DBs
NCBI-GeneID:
103035812
NCBI-ProteinID:
XP_049331507
LinkDB
All DBs
Position
3:63016667..63058456
Genome browser
AA seq
975 aa
AA seq
DB search
MATQTPGAAPSGALSRRKSGGPSSPFWEGPETAAQLEAVRSWIGKHYKKYVQADAPSTKS
LAGLVVQLLQFQEDAFGRRATSPDLTKLPAKCFFDMKPGGALCHILGSVYKFKTEQGWRR
FDLQNPSRVDRNVEMFVSVEKTLKQNNLLSRPVVYLSPDLDQKQASKLEDIITRHQGSVT
EDRLQATHHIYPSPSSADEEEWFRPVMRVDQDVMVHWGMYPDSYDTLVPVSDVDAEVEEP
PTPDRPWKVHVKWVLDTDMFNEWMNEEDYEVDDSKRSVSYRRRVYPRDEEEQKVSGKKRR
RSPSPSSSEPRKKGGKKGSGSYKRRGQQEEEPEEDLTKDMEDPTPVPNMEEVILPKNVNL
KKDSENTPVKGGTMADLDDQEDEFMSGVRDEEDQGREFGRGLDSEESATEQTHHIIIPSY
TSWFDYNCIHRIERRALPEFFNGKNKSKSPEIFLAYRNFMIDTYRLNPQEYLTSTSCRRN
LTGDVCALIRVHAFLEQWGLINYQVDAESRPLPMGPPPTPHFNVLTDSPSALVPLQHRPL
QVSASQHMLHFPEKSRDKPSDLQNFGLRTDIYARKHPKTKGASAGREWTEQETLLLLEAL
EMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSEASLGPLAYQPVPFSQSGNPV
MSTVAFLASVVDPRVASAAAKAALEEFSRVREEAPPELFNPKAPEPGRSLPRLDPPFGLQ
SSNVSGPDSDPLEKSDGAGIEKLEFDSDQHEKTGGENVAGEGERVKNEDRDESEGEKGEE
SAAGEAMEVGHAQGEVVVEEDRRKGAELELVESNISSAAAAALASAATKAKHLAAVEERK
IKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLSERQNFHLEQVKYAE
IKARQHIEQQQQQAGASQSGGAAYNPAHHGRAIGGGGAGQMMGTRHAGAPNGMYPTPPSS
QSEGTTPISRPPAES
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atggcgacccaaaccccgggagcggctccgagcggcgcgctcagccgcaggaagagcggg
ggacccagctccccgttctgggagggtccggagaccgcggcgcagctggaggcggtccgc
tcctggatcgggaaacactataaaaagtatgttcaggctgatgctccgtccaccaagtct
ctggcagggctggtggttcagctgctgcagtttcaggaggacgccttcggccgcagagcg
accagcccagacctcaccaaactacccgcgaaatgtttctttgatatgaagcctggtggt
gctctgtgtcacatcctcggatctgtgtacaagtttaagactgagcaaggctggcgccgc
tttgacctgcagaatccgtccagagtcgaccgtaacgtggagatgttcgtcagtgtggag
aaaaccctgaaacagaataacctgctgagcaggcctgtggtttacctgtctcctgatctg
gatcagaaacaggcgagcaaactggaggatatcatcacacggcatcagggttcagtcaca
gaagaccggttgcaggccacgcaccacatctacccctccccctcctcagcagatgaagaa
gagtggttcagacccgtcatgcgggtcgatcaagatgtgatggtgcactggggcatgtac
ccagacagttatgatacgttggttccagtcagtgatgttgatgcagaagtagaggagccc
cctactccagatcgaccctggaaggttcatgtgaagtgggttctggacacagacatgttt
aatgagtggatgaatgaggaagactatgaggtggacgacagtaaacgtagcgtgagctac
cggcgccgcgtttacccacgagacgaggaggaacaaaaggtgtccggtaagaaaaggaga
cgctccccctctccgtcttcatctgagcccaggaagaaaggaggaaagaaaggttcaggg
tcgtataagaggcgtggccagcaggaggaggagccagaggaggacctgactaaggacatg
gaggacccaacacctgtacccaacatggaggaggtcatactacccaaaaacgtaaacctg
aagaaggacagtgagaacacgcccgtgaaaggaggaaccatggctgacctggatgatcag
gaggacgagttcatgtctggagtccgggacgaggaggatcagggtcgggagtttggtcgt
ggcttggacagtgaggaaagcgctacagagcagactcaccacatcatcatacccagctac
acctcctggttcgactataactgtattcatcgaatagagaggagagcgctgcctgagttt
ttcaacgggaagaacaaatccaaatcaccagagatatttctggcgtatcgtaacttcatg
attgatacgtatcggctgaaccctcaggagtacctgacctccacttcctgcagacgcaac
ctgaccggagacgtgtgcgccctcatcagggttcacgcgtttctggagcagtggggtctg
attaattaccaggtggatgcggagagcagacccctgcctatgggtcctccaccaacccca
cacttcaacgtcctcacagactctccatcagccctcgtccctctgcagcacagaccctta
caggtttcagcctctcagcatatgctccatttccccgagaagagcagagacaagccttca
gatctgcagaacttcggactgagaacagatatttacgccaggaaacatcctaagaccaaa
ggcgcgagtgcagggcgcgagtggaccgaacaagagacgctgttactcctggaggcgttg
gagatgtataaagatgactggaataaagtgtcggagcacgtaggcagcagaacgcaggac
gagtgtatcctgcacttcctgcggttgcctatagaggacccgtacctggagaactctgag
gcctcgttaggacccctggcctaccagcctgttcctttcagccaatcaggaaaccccgtt
atgagcacggtggcctttctcgcgtctgtggtggatcccagagtcgcctctgctgctgcc
aaagctgccctggaggagttctcccgggtcagagaggaagcccctcctgaactcttcaac
ccaaaagccccagaaccggggcggagtctccctcggctcgaccctccgtttgggctgcag
tccagtaacgtctccggacctgattctgatccactggagaagagtgatggagccggaatt
gaaaaattggagtttgattctgaccaacatgagaagactggaggagagaatgtggcggga
gagggggagcgagtgaagaacgaggacagagacgagagtgaaggagagaaaggagaagag
agcgcagcaggggaagcgatggaagttggccacgctcaaggagaagtagtagtagaagaa
gatagaagaaagggggcggagcttgagttggtcgaatcgaatatatcatcagcagccgct
gctgcgttggcctctgctgccaccaaagccaagcacttggctgcagttgaggagaggaag
atcaaatctctggtggctctgctggttgaaactcagatgaagaagctggagatcaaacta
aggcactttgaggagctggagaccatcatggaccgagaaaaagaggcgctggaacagcag
aggcagcagctgctctctgagaggcagaacttccacctggagcaggtaaaatacgctgag
ataaaggccagacagcacatcgaacagcagcagcagcaggctggagcctcgcagagcggc
ggagcagcttataaccctgcacaccacggtcgagccatcggcggtggaggagccgggcag
atgatgggcactcggcatgctggggctcctaatggcatgtatccaactccaccttcctca
cagtctgaggggaccacgcccatctcccgccctccagccgaaagctga
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integrated database retrieval system
