Astyanax mexicanus (Mexican tetra): 103035887
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Entry
103035887 CDS
T05042
Symbol
zc3h12b
Name
(RefSeq) probable ribonuclease ZC3H12B isoform X1
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amex03019
]
103035887 (zc3h12b)
Messenger RNA biogenesis [BR:
amex03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
103035887 (zc3h12b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
KH_N4BP1_1st
UBA_N4BP1_C
TNFR_ELAPOR1_6th
zf-CCCH_4
zf-CCCH_2
Omega-toxin
Motif
Other DBs
NCBI-GeneID:
103035887
NCBI-ProteinID:
XP_007256464
Ensembl:
ENSAMXG00000011328
UniProt:
A0A8T2MCX2
LinkDB
All DBs
Position
1:35713988..35742119
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AA seq
1012 aa
AA seq
DB search
MVLELAAPASAGPSLQRCIPHIERVFRVKVSCRAADPHQGACGVLVNIDDGTEEDCTKAK
DYIVSLISPVQRHRERLTLWLQRRLHSLRAAIEYESCAVLQVRDHALELQGGPAQVTAAC
AMLQRLKMEHRGRCRDPQPAPSPTRQGSPEEEEEEDEGEEEGSSSESEGEARSRSGSSGG
GAAEAGGGRKREPLMATKPHRQLCRSPCLDRPSFSQSSTLQELRAEDARSDSAHKMFPTS
AGHAPFQQTSSESRDYQTKMDFALKLGYSGEQVESVLSKLGPSALINDVLAELVRLGNKG
ELEAQAPVNLASLAPRGPGAKEAVSPEVSLEEETTDTYDNLRPIVIDGSNVAMSHGNKEV
FSCLGIQLAVDWFLEKGHKDITVFVPAWRKEQSRPDAPITDQEILRKLEKEKILVFTPSR
RVQGRRVVCYDDRFIVKLACDSDGIIVSNDNYRDLQNEKPEWKKFIEERLLMYSFVNDKF
MPPDDPLGRHGPSLENFLRKRPVVPEHKKQPCPYGQYSKSKKCTYGHKCKYYHPERAAQP
MRSVADELRAFAKLSAVKTMSEGALAKCGTSGGTARGDTSEAKRVAPKRQSDPSIRSVAC
EQEERLCPARKAEANSVPSLVTALSVPTMPPTKSHAAGALNTRSASSPVPGSLHFTHSSL
EHTSSIQYPPILVTNSQGASVAYSEPFPKYDSVVSDHGYYSMLSDFSTMSLGSMQDSFCS
LEQPDPAGVGGGYPGRGSSMCPEPGRSHSSDSFSSYSGEMYSMEGSMDDSMKGPSAQSQV
QSSAQTRLQAFAHGFHHEALTRVQSYGTDEPKPGPRKQSSAHLVPHAQHAVVGARSSCPG
DYPPLSQNVLPSSGPTQQGRSLGMTRMDSISDSRLYESNPLRQRRPPLCREQHASWDPLP
CGNEPYGYGGYGLAGGLMPCCERVMVRSMPEKMEQIWRSPWDTPPGPPPGPLGPAVEPQE
RHPIPEQQYQTYRNLCNIFPAYVVHSVMEKNPHMTDPQQLAAVIVTRLRSCH
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atggttttggagctggcagcgcccgccagcgcaggcccgtcgctgcagcgctgcatcccg
cacatcgagcgcgttttccgggtgaaggtgagctgcagagccgcggacccccaccaagga
gcctgcggcgtgctggtcaacatcgacgatggcacggaggaagactgcaccaaggcgaag
gactatattgtgtctctgatatcgcctgtccagcggcaccgcgagcgcctgaccctgtgg
ctgcagcggcgcctgcactccctccgtgccgccattgagtacgagagctgtgcggtgctg
caggtgagagaccatgctctggagctgcagggcggccccgcccaggtgacagctgcatgt
gccatgctgcagcgtctcaagatggagcaccgtggacggtgccgtgacccacagcctgcg
ccctcgcccacaaggcaaggctcgcctgaggaggaagaggaggaggacgaaggagaggaa
gaggggagcagctcagagagtgaaggggaggcgaggtcacggagtgggagctcgggaggc
ggagctgctgaagccggaggaggtcgtaaacgggagccgctaatggctacgaaaccacac
cgccaactttgccgatcaccatgtctggaccgtcccagttttagccagagcagtacgcta
caggaactacgtgcagaagatgcacgctcggactccgcccacaaaatgtttcctacctct
gcaggccacgcccccttccaacagacaagcagcgagagcagagactaccagaccaaaatg
gactttgcgctaaagctgggttactcaggggagcaggtagagtctgtcttgagcaagtta
ggccccagtgctcttatcaatgatgtcctggccgaactcgtcaggcttggtaataagggt
gaactggaagcccaggcaccggtcaatttggccagtctggccccccgaggccccggggcc
aaagaagcagtcagtccagaggtctcgcttgaggaggagacaacggacacgtatgataac
ctacgacccatcgttatagacggatccaatgtagccatgagccatggaaacaaagaggtt
ttctcgtgcctgggcatccagctggcggttgattggttcctggagaagggacacaaagac
atcaccgtgttcgtaccggcgtggagaaaagagcagtccagaccagatgctcccataaca
gatcaggagatcctgagaaagctggagaaagagaagatcctggtcttcaccccgtctcgt
cgtgtccagggccggcgggtcgtgtgctacgatgaccgattcattgtcaagctggcctgt
gattctgacggcattatcgtctccaacgacaactatcgggacctgcagaacgagaagccg
gagtggaagaagttcatcgaggagaggctcctcatgtacagctttgtcaatgacaagttt
atgccccctgatgacccactagggagacatggtccaagcctggagaatttcctacgcaag
cggccggtggtacctgagcacaagaagcaaccgtgtccttacggtcagtacagcaaaagt
aagaagtgcacgtatggtcacaagtgtaagtactatcacccggagagagctgctcagcca
atgcgttctgtagcagatgaactcagagctttcgccaaactctctgctgttaagaccatg
agcgagggtgctcttgccaagtgtggcacctctggtggcactgcaagaggggacacttca
gaggccaaacgagtggcgccaaagcggcaatcagacccgagtatccgctcggtagcatgt
gaacaggaagagcggctttgtccagcccggaaagcagaagcaaattccgtcccatcctta
gtgactgctcttagcgttcccaccatgccacctacaaaaagtcatgcggccggtgccttg
aatacccggtccgcaagtagccctgtgccggggtcacttcacttcacccacagctcgcta
gaacacaccagcagtatccagtaccctcctatccttgtcacaaacagccagggagcatca
gtggcatacagtgaacctttccccaaatacgattctgtggtcagtgaccacggctattac
tcgatgcttagtgatttctccaccatgagcttgggtagcatgcaggacagcttctgtagc
ctggaacagcctgatccagcaggggtagggggagggtatcccggacggggctccagcatg
tgtccagaacctgggcgcagtcattcttctgattccttctcttcctacagtggagagatg
tactccatggagggcagtatggacgacagcatgaaaggcccatctgcacaatcccaagtg
cagtcatccgcccagactcgcttgcaagcatttgcacacggtttccaccacgaggctttg
acaagggtccaaagctacggcacagatgagcccaaacctggaccgcgcaagcaatcttca
gctcaccttgtgccccatgcgcagcatgctgttgtaggagctcgctccagctgtcctgga
gactacccccctctttcccagaacgtgctgccttcgtctggccccacacagcaagggaga
tccctgggaatgacccgcatggacagcatctcggactcccggctatacgaaagtaacccg
ctgaggcagcgccgaccacctttgtgccgggagcagcacgcaagctgggatccactgcct
tgtgggaatgagccttatgggtatggtggttacggactggcgggaggactcatgccatgc
tgtgagcgtgtcatggtgcgcagtatgccggagaagatggagcagatttggaggtctccc
tgggataccccaccgggcccacccccaggacctctcgggccggcagttgaacctcaagaa
cgccacccgatcccggaacaacagtaccagacttaccgaaacctctgcaatatctttcca
gcatacgtagtccactcggtcatggagaagaatcctcacatgactgatccccagcaacta
gcagcagtcatcgtaacaagactgcggtcctgtcattga
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