Astyanax mexicanus (Mexican tetra): 103035965
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Entry
103035965 CDS
T05042
Symbol
sox1b
Name
(RefSeq) transcription factor Sox-1b
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
amex03000
]
103035965 (sox1b)
Transcription factors [BR:
amex03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
103035965 (sox1b)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
SOXp
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
103035965
NCBI-ProteinID:
XP_022530425
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All DBs
Position
21:complement(26615943..26617960)
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AA seq
347 aa
AA seq
DB search
MYSMMMETDLHSPGAQTTGSATGSHAGPLAIGGGGGGGGGGGKAGQERVKRPMNAFMVWS
RGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRP
RRKTKTLLKKDKYSLASGLLGAPGMNQRGLESPGGLSGNGSVSAAAGYAHVNGWTNGAYA
AAAAMMQEAQLAYGGPHGGAGGAHPHHMHPHHHHPHHHPHHSAQSVHRYDMSALQYSPIS
NSPGYVSASAASPYGGLAYTQHHSHHQSATSLVKAEPSASPPLAAHTRAPCPGDLRDMIS
MYLPAAAAAAGGADAAEQTVQSRLHALPQHYQSATAGINGTVPLTHI
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atgtacagcatgatgatggagacggacctgcactcgccgggtgcgcagacaaccgggagc
gcgacggggtcgcacgcgggtccgctggctataggcggaggaggaggtggaggaggagga
gggggcaaagcggggcaggagcgcgtgaagcggcccatgaacgcgttcatggtgtggtcg
cgtggacagaggcgcaagatggcccaggagaaccccaagatgcacaactcggagatcagc
aaacgcctgggtgccgagtggaaggtgatgtccgaggcggagaagcggccgtttatcgat
gaggccaagcggctgcgcgccatgcacatgaaagagcacccggactataagtaccggccc
cggaggaagaccaaaacgctgcttaagaaagacaagtactcgcttgccagtggtttgctc
ggggcaccgggcatgaaccagagaggtctcgagagccccggcggactgagcggtaacggc
agcgtgagtgccgcggcgggctacgcgcacgtgaacggctggacgaacggcgcttatgcg
gcggcggcggcgatgatgcaggaagcgcagctggcctacggaggaccgcacggaggagcg
ggaggcgcgcacccgcaccacatgcacccgcaccaccaccaccctcaccaccatccccac
cacagcgcgcagtccgtgcaccgctacgacatgagcgcgctacagtacagccccatctcg
aactcgccgggctacgtgagcgcctcggccgcctcgccgtacggcggtctcgcgtacacg
cagcaccattcccaccaccagagcgccacttccctggtcaaggccgagcccagtgccagc
ccgccgctcgccgcacacacccgcgcgccctgtcccggagacctgcgggacatgatcagc
atgtacttacctgcggcagcggcggcggccggaggcgcagatgctgccgagcagacagtc
cagagcagactgcacgcgctgccgcagcactaccaaagcgccacggccggcattaacgga
accgttccgttaacacacatttga
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integrated database retrieval system
