Astyanax mexicanus (Mexican tetra): 103036305
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Entry
103036305 CDS
T05042
Symbol
rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
amex03016
]
103036305 (rtcb)
Enzymes [BR:
amex01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
103036305 (rtcb)
Transfer RNA biogenesis [BR:
amex03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
103036305 (rtcb)
Prokaryotic type
tRNA splicing ligases
103036305 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
103036305
NCBI-ProteinID:
XP_007235117
Ensembl:
ENSAMXG00000042320
UniProt:
A0A8B9JVN6
LinkDB
All DBs
Position
2:complement(44879879..44892394)
Genome browser
AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIDKNCWRIKKGFVPNMQVEGVFYVNDSLEKLMFEELRNACRGGGFG
GFLPAMKQIGNVAALPGIVHKSIGLPDVHSGYGFAIGNMAAFDMDDPTAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQALFDHIPVGVGSKGVIPMSAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDNIVVNDRQLACAHITS
SEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFSTTPDDLDMHVIYDVSHNIAKVEE
HMVDGKQKTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVND
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgctcctataacgatgagctccagtatctggataagatcgacaagaactgctgg
cggattaagaagggcttcgtaccaaacatgcaggtggagggtgtgttctatgtcaatgac
tcactggagaagttaatgtttgaggagctgagaaatgcttgtcgtggaggagggtttgga
ggatttctgcctgctatgaagcaaattggaaatgtggcagccctgccaggaattgtacat
aaatctataggcttacccgacgttcactctggatatggctttgctattggaaacatggct
gcttttgacatggatgaccccacagcagttgtctcaccaggtggtgtcgggtttgacatt
aactgtggtgtgcgtctgctgaggactaacctggatgaaggagatgttcagccggtgaag
gagcagctggctcaggccctgtttgaccacattcctgtaggagtaggatccaaaggcgtg
attcccatgagtgccaaagacctggaggaagcgctggagatgggggtggactggtctctg
cgagagggctacgcctgggcagaagataaggagcactgtgaggagtatggcaggatgttg
caggctgacccaaacaaggtctcctcaaaagcaaagaagagaggactgccacagttagga
acattgggggctggtaaccactatgctgagatccaggtggtagatgagatctacaatgac
tatgcagccaagaagatgggcattgatcacaaaggccaagtgtgtgtgatgatccacagt
gggagtcgtggtctgggccaccaggtggccacagatgcattggttgccatggagaaggca
atgaagcgagacaacattgtggtaaatgatcgtcagcttgcctgtgctcacatcacttcc
tctgagggtcaggactacctgaaaggcatggctgctgcaggcaactatgcatgggtcaac
cgctcctccatgactttcctcacacgtcaggccttctctaaagtgttcagcaccactccg
gatgacctggacatgcacgtgatttatgacgtgtctcataacatcgctaaggtggaagag
cacatggtggacggtaaacagaagacactgctggtgcaccgcaaaggctccacaagagct
ttcccccctcatcatcccctcattgctgtcgactaccagctgacaggtcagcctgtgctc
atcggtggcacgatgggtacctgcagctatgtgctgacgggcactgagcaaggcatgacc
gagacattcggcacaacctgccacggcgctggtcgagcactgtccagagcaaaatcccgc
aggaatctggacttccaggatgttttggataaactagctgacatgggcattgccatcaga
gtggcttcacccaaactagtcatggaagaggctcctgaatcctacaaaaacgtgaatgat
gtggtcaacacgtgccacgacgccggcatcagcaagaaggccatcaaactcagacccatc
gcagttattaagggttaa
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