Astyanax mexicanus (Mexican tetra): 103036726
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Entry
103036726 CDS
T05042
Symbol
smarcc1a
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
103036726 (smarcc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amex03021
]
103036726 (smarcc1a)
03036 Chromosome and associated proteins [BR:
amex03036
]
103036726 (smarcc1a)
Transcription machinery [BR:
amex03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
103036726 (smarcc1a)
Chromosome and associated proteins [BR:
amex03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
103036726 (smarcc1a)
PBAF complex
103036726 (smarcc1a)
GBAF(ncBAF) complex
103036726 (smarcc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
BRCT
HEAT_GCN1
BRCT_2
DUF919
Motif
Other DBs
NCBI-GeneID:
103036726
NCBI-ProteinID:
XP_022541575
Ensembl:
ENSAMXG00000010545
LinkDB
All DBs
Position
1:complement(129619839..129664287)
Genome browser
AA seq
1111 aa
AA seq
DB search
MAATGAGTAGGAGSGGAGTGTGGAAGAAGAAVGRKKDGGPAGKFWESGETVAQLEAVRQW
ISKHYKKHVQADSPSCKTLAGLVVQLLQFQEDAFGRRVSNPALTKLPAKSFLDFKPAGAL
CHILGSAYKFKSEQGWRRFDLQNPSRMDRNVEMFMNIEKTLAQNNCLTRPVVYIASDVDQ
KQASKLKDIIKRHQGSITDDKSKATHHICPSPSQPEDEEWLRPVMRKDKQVLVHWGSYPD
SYDTWVPVSDVDAEIEDPPNSEKPWRVHAKWVLDTDAFNEWMNEEDYEVDENRKLVSFRQ
RIFPREEESSRTPDRKERKSLAGGKKRRRSPSPPTTPAESRKKGGKKGNPGPHWKRRGHR
DDDEQDEDLTKDMEDPSPVPGMEEVSLPKNVNQKKDSENAPVKGGTVADLDEQENGSVAS
GGKDDEDQAKAEVNRLIDSGEDNVTEQTHHIIIPSYSAWFDYNSIHEIERRALPEFFNGK
NKSKSPEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAVMRVHAFLEQWGLINYQ
VDAESRPLPMGPPPTPHFNVLADTPSGLVPLHHRPPQVPPAQQMLNFPEKGKDKPTDLQN
FGLRTDMYSKKSTKGKGSGTREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILH
FLRLPIEDPYLESSEATLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVAAAAAKAALE
EFSRVREEVPAELVEAHVKKVQEAARNTGKVDPAFGLESSGIAGTAPEEPEKTETAEPEK
MDTDSEPPQTDKAESKDEAEKPNDSAEKPAEGEKVKSEPTDKPEREEEEGEGETKEAASD
AEKEKEEAMEVAAEEGKEPAETQEEGSKKLELDVGEGNIATAAAAALASAATKAKHLAAV
EERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAFHMEQL
KYAEMKARQQMEQQAAAAAAAGQQGAGGHAQPHGPPGHGPPPHGPLTHGPPPGMHPGHPG
YPPMHHPLGPHHPSQSGPMVGPGQPMPGRMMPGPNAGGPPPGGMPPLMGPRHPGAPNGLF
PGPPPPTAAAQPDALPPAPAPSLPAPHPAEN
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgaccggtgcgggaacagcggggggagcggggtccggcggggccgggactgga
accggcggggcggcgggagccgcgggtgccgcggtaggcaggaagaaggacggcggaccg
gcggggaagttctgggagagcggggagaccgtggcgcagctggaggctgtgcggcagtgg
atcagcaagcactacaagaagcatgtccaggccgactctccatcctgtaagactctggca
gggctggtggtgcagctgctccagttccaggaggacgcttttggacgaagagtgagcaac
ccggccctcaccaaactgcccgcgaagagcttcttggacttcaaacccgctggagcactg
tgtcacattctgggttcagcctacaagtttaagagcgagcagggctggcgaaggttcgat
ctgcagaacccgtccaggatggaccgaaacgtggagatgttcatgaacattgagaaaact
cttgctcagaacaactgcctgacccgaccggtggtgtacatcgcctccgacgtggaccag
aagcaggccagcaaactgaaggacatcatcaagagacaccagggctccatcactgacgat
aagtccaaagccactcatcacatctgtccctccccctctcagcctgaagacgaggagtgg
ctgcgtccggttatgaggaaagataaacaggtgctggttcactggggcagttaccccgac
agttatgatacctgggtgcccgtcagtgacgtggacgcagagattgaagatccaccgaac
tccgagaaaccatggagggtgcatgctaagtgggtgttggacacggacgcgtttaacgag
tggatgaacgaggaagattacgaggtggacgagaacaggaagctggtgagcttccggcag
agaatcttcccccgagaggaggagtcttcccgtacgcccgaccgcaaggagcgaaagtcc
ctcgccggaggaaagaagaggcggcgctccccgtccccgcccaccacccccgccgagtcc
cgcaagaagggtggaaagaaaggaaacccggggccgcactggaaacgccgaggtcaccgt
gacgacgacgagcaggacgaggatctcaccaaggacatggaggatccatcacctgttcca
ggaatggaggaggtttcgcttcccaaaaacgtgaatcagaagaaagacagtgagaatgcg
ccggtgaagggagggaccgtggctgatctggatgaacaggaaaacggctcagtagcgtct
ggtggcaaagatgatgaagatcaggctaaagcggaggtgaaccgtctgatcgactctgga
gaagataacgttacagaacaaacccatcacatcatcatccccagctactccgcctggttc
gactacaactcgatccatgaaatcgaaagacgagctttaccggagttcttcaacggcaag
aacaaatcaaagtctcccgagatatatctggcgtatcgtaactttatgatcgatacgtac
cggctgaaccctcaggaatacctcacgtccacctcctgcagacgcaatctgactggagac
gtttgcgctgtgatgagggtccacgcgtttctggagcagtggggactcattaattaccag
gtagatgccgagagcagaccactgcccatgggacccccgcctacaccccatttcaacgtc
ctggccgacacgccctcgggccttgttccgcttcaccatcgccctccgcaggttcctcct
gctcagcagatgctgaacttcccagaaaaaggcaaagacaagcccacagacctgcagaac
tttggtctgcggacggacatgtactcaaagaagagcaccaaaggtaaaggaagcggcacc
agagagtggactgagcaagagactctactgctgttagaggctctggagatgtataaggac
gactggaacaaggtgtcggagcacgtgggcagcaggacgcaggacgagtgtatcctgcac
ttcctgcggctgcccatcgaggacccgtacctggagagttcggaggccacgctcggaccc
ctggcctaccagcccgtccccttcagccaatcaggaaaccccgtcatgagcaccgtggcc
ttcctcgcctccgtggtggatcccagagtcgctgctgccgccgccaaggctgccctggag
gagttttctcgggtacgtgaggaggttccagcggagctggttgaagctcatgtgaagaag
gtgcaggaggcggcgaggaacaccgggaaggtggatccagccttcggcctggagagcagc
ggcatcgccggcactgcgccggaggagccggagaaaacggaaacagcagagccagaaaag
atggacacggactcagaacctccacagacagacaaggcggagtcgaaggatgaagccgag
aagcctaacgattctgcggagaaaccggcggagggagagaaggtgaagagcgaaccgacg
gataaacccgagcgtgaggaagaggagggtgaaggagagacgaaggaggcggcgtctgat
gctgagaaggaaaaggaggaggcgatggaggtggcagcggaggagggtaaggaacccgca
gagactcaggaagagggcagcaagaaactggagctggacgtgggcgaggggaacatcgcc
accgctgcagccgctgcgctcgcctccgccgcaactaaagctaagcacttggccgctgtg
gaggagaggaagatcaagtctctggtggctctactggtggaaactcagatgaagaagcta
gagattaaactccgtcacttcgaggagctggagacgataatggaccgagagaaagaggcg
ctggagctccagaggcagcagctgctgacggagaggcaggcgttccacatggagcagctg
aagtatgcggagatgaaagctcgccagcagatggagcagcaggcggcggcagcggcggcg
gcaggtcagcagggtgccgggggtcacgcccaaccacacggacccccgggccacggaccc
ccaccacacggaccactgacccacggcccacctcccggcatgcaccccggacaccccggg
tacccgccgatgcaccatccgctgggaccccaccatccgtcacagtcaggaccaatggtt
ggaccaggtcagcccatgccaggccggatgatgccggggccgaacgctggaggacccccg
ccgggtgggatgcctcctttgatggggcccaggcaccctggagcccccaatggcttgttt
cctggtcctccaccacctactgctgctgcacagcctgatgccctgccaccggctccagca
ccctcactccctgccccgcacccggccgagaactaa
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integrated database retrieval system
