Astyanax mexicanus (Mexican tetra): 103036828
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Entry
103036828 CDS
T05042
Name
(RefSeq) E3 ubiquitin-protein ligase NHLRC1
KO
K10602
E3 ubiquitin-protein ligase NHLRC1 [EC:
2.3.2.27
]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
103036828
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
amex04121
]
103036828
Enzymes [BR:
amex01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
103036828
Ubiquitin system [BR:
amex04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
103036828
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
zf-RING_5
zf-RING_UBOX
zf-RING_2
WD40_CDC20-Fz
WD40_WDHD1_1st
Phage_coat
zf-C3HC4
zf-C3HC4_4
Baculo_IE-1
Motif
Other DBs
NCBI-GeneID:
103036828
NCBI-ProteinID:
XP_007238536
Ensembl:
ENSAMXG00000025937
LinkDB
All DBs
Position
1:123018996..123021823
Genome browser
AA seq
442 aa
AA seq
DB search
MSETPAFQTSTSASRRVKGAEEVLQEIRSDLLECKVCFERFSSDQNGRRPRNLPCGHVIC
LACVCALAHPVLRQLECPFCRRLCDIGGTYDCQALLDLQDLVASAGIPSCSANRVPGSGP
SCSGHPCPEGMGPQASAESPGLLVQMHLRAAFGGWGTLINPTGVAVLEPSMASVVVVHGG
HEKVNIFNSQGHYLHSFGCYGHNRDQLCHVLDVAVSTSGHIVVTDAGDSSVKVFTSSGLP
LATIIGPFELPWGVDINNCGHILVTDAQAGKLWQIKVDFGQNVVSTKMVVLQDLQCPRAV
VSCKVSGCVAVLEHMEVQRRHNGGSAATRLKLFSQDFVLLTLVDSSGLSQMSSMKLNISY
VTFDRHGNVIVADSQQGTVWSLGDLETTTVMTALVQDGLVRPVGLVATEQNSLIVLDSGD
HTVKIYSTSAENSNCAKTIKSI
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagacccctgccttccaaacaagcacctctgcctctagaagggtaaaaggtgca
gaggaggttctgcaggagatccgctctgacctgctggagtgtaaggtctgcttcgaaagg
ttctcctcagaccagaatgggcggagacctaggaacctgccctgtggtcacgtgatctgc
ctggcatgtgtctgtgccctggcacaccctgtcttgcgccaactggagtgccctttctgc
aggcgcttgtgcgatatcgggggcacctacgactgccaagccttgcttgaccttcaggac
ctggttgcttcggctggaattccaagctgttcagccaacagagttcctggatcaggccca
tcttgctctggtcatccatgcccagaaggaatgggaccacaagccagtgcagaatcgcca
ggtttgctcgtccagatgcatcttcgtgccgcttttggaggctggggtacactcatcaac
ccaactggggtcgcagtactcgagccatcaatggcatcagtggtggtggtgcacgggggc
catgagaaggtcaacatcttcaactctcagggtcactatttgcacagcttcggttgttac
ggtcacaaccgtgaccaactgtgccacgttcttgatgttgcagtatctaccagtggtcat
attgttgtgaccgatgctggagacagttcagtgaaggtctttacttcaagcggacttcct
ttggcaactatcattgggccgtttgagcttccatggggagttgacatcaacaactgtggg
cacattctcgtgacagacgctcaagctggcaaactttggcaaataaaggtggactttgga
cagaatgttgtctcaaccaagatggtggttctgcaagaccttcaatgcccaagagctgta
gtgtcatgtaaagtttctgggtgtgttgcagtcttggagcacatggaggtccaaagacgc
cacaatggaggttctgcagcaactcgactaaagctgttcagccaagactttgtcctccta
actttggtggacagttcaggcttgagccagatgtcctcaatgaagctgaacatctcctac
gtcacctttgacagacatggaaatgtcattgtggctgattcccaacaaggcaccgtatgg
agtttgggggacctggagacgacgactgtgatgactgcactggtccaggatggactggtg
cgtccagtaggtttagtagcaactgagcagaactctctgatcgtcttggacagtggagat
cacactgtgaagatctactcaaccagcgcagagaactcaaactgtgcgaaaaccatcaaa
tcgatctga
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