Astyanax mexicanus (Mexican tetra): 103037120
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Entry
103037120 CDS
T05042
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103037120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amex03019
]
103037120
03036 Chromosome and associated proteins [BR:
amex03036
]
103037120
Enzymes [BR:
amex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103037120
Messenger RNA biogenesis [BR:
amex03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
103037120
mRNA degradation factors
5'-3' decay
Decapping complex
103037120
Chromosome and associated proteins [BR:
amex03036
]
Eukaryotic type
Gene silencing
piRNA pathway
103037120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
103037120
NCBI-ProteinID:
XP_007258341
Ensembl:
ENSAMXG00000033980
UniProt:
A0A3B1IYC9
A0A8T2M524
LinkDB
All DBs
Position
3:30534740..30545955
Genome browser
AA seq
493 aa
AA seq
DB search
MASARMENAGPVVMGINKQNGQLRGQPKPISQSGPMAVSGQPGKVPVGALKSAASLQEGP
GIRFGDDWKKSLQLPPKDNRVKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQE
ESIPIALSGRDILARAKNGTGKSGAYLIPMLERIDLKKDHVQAMVMVPTRELALQVSQIS
IQLSKHLGGVKVMATTGGTNLRDDIMRLDETVHVIIATPGRILDLIKKGVAKVDKVQMIV
MDEADKLLSQDFVVLIEDIISFLAKNRQILLYSATFPTSVQKFMSKHLQKPYEINLMEEL
TLKGITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYI
HAKMMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGR
SGRFGHLGLAINLITAEDRFNLKAIEDQLVTDIKPIPGSIDKSLYVAEYHLGNPNSEAEA
EEREHLAGKPQTS
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atggctagcgcaagaatggagaatgctggccctgttgtaatgggcatcaacaagcagaat
ggacagctcagaggacaacctaaaccaatctcacagtcaggacctatggctgtgagtggt
cagcctggaaaagttcctgttggagctctgaaatctgctgccagcttgcaagaaggacct
ggaatcaggtttggtgacgactggaaaaagagcctacagcttccccctaaagacaataga
gtcaaaacttcagatgtgaccgccaccaaggggaacgagtttgaggactactgcttaaag
agggagctgttgatggggatctttgaaatgggttgggaaaaaccttcccccatccaggag
gagagtatacccatcgctctttctggtcgtgacatcctggctcgtgccaaaaacggaact
ggaaaaagtggggcttatttgatccctatgctggagaggatagacctgaaaaaagatcat
gtccaggccatggtaatggtgccaactcgtgagctagcgcttcaggtcagtcagatcagc
attcagctaagtaagcatcttggtggagttaaggttatggcgaccactggcggaaccaat
ctacgagatgacatcatgcgattggatgagactgtgcatgttatcatagccacaccaggc
aggattctggacttgatcaagaagggtgtagccaaagtggataaagttcagatgattgtt
atggatgaggctgataagttgctttcccaggactttgttgtgctcattgaggacattata
agcttcctggccaagaacaggcagattctgctctattccgccacctttcccaccagtgta
cagaaatttatgtcaaagcaccttcagaagccctatgagattaatctgatggaggagcta
accctaaagggcatcactcagtactatgcctatgtcactgaaaggcagaaagtacactgc
ctcaacacacttttctctaggctccagattaatcagtccattatcttctgcaactccact
caaagagtggaacttctggccaagaaaattactcagctcggctactcttgcttttacata
catgccaagatgatgcaggagtacagaaaccgagttttccacgactttagaaatggactg
tgccgaaatctagtttgcacagatttgttcacgcgaggtattgacatccaggcagtgaat
gtggtcatcaactttgactttcccaagaatgcagagacctatctgcatcgtattgggcgc
tcaggaaggtttggccacctgggtctggccattaatctgatcacagcagaagatcgcttc
aacctaaaggccattgaagatcagctggtgactgatatcaagcccatcccaggcagcatt
gataaaagcctctatgtggcagagtaccacttgggaaaccctaattccgaagcagaggca
gaggagcgggaacatctggcaggaaagccccaaacctcctaa
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