Astyanax mexicanus (Mexican tetra): 103037264
Help
Entry
103037264 CDS
T05042
Symbol
col1a2
Name
(RefSeq) collagen alpha-2(I) chain isoform X1
KO
K06236
collagen type I alpha
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex04510
Focal adhesion
amex04512
ECM-receptor interaction
amex04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
103037264 (col1a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
103037264 (col1a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
103037264 (col1a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
amex00536
]
103037264 (col1a2)
Glycosaminoglycan binding proteins [BR:
amex00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103037264 (col1a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
103037264
NCBI-ProteinID:
XP_049331371
Ensembl:
ENSAMXG00000021065
LinkDB
All DBs
Position
3:48729470..48754647
Genome browser
AA seq
1147 aa
AA seq
DB search
MGLMGARGPGGPPGSPGPQGLQGHAGEPGEPGQAGAVGPRGPPGPPGKAGEDGNNGRPGK
PGDRGPAGAQGARGFPGTPGLPGMKGHRGYNGLDGRKGEPGAAGSKGENGAHGANGTPGQ
RGGRGLPGERGRAGPAGPAGARGADGNTGPAGPAGPLGAAGPPGFPGAPGPKGEIGAAGA
TGPSGPQGQRGEPGPNGAVGPVGPAGNPGANGINGAKGAAGLPGVAGAPGFPGPRGGPGP
QGPSGPSGPRGLAGDPGPIGVKGDSGVKGEPGSSGPQGPPGPAGEEGKRGATGEQGATGP
AGLRGGRGAAGTRGLPGLGGRAGPMGMPGPRGATGAGGPRGPPGDAGRAGEAGLTGARGL
PGSPGSGGPPGKEGPVGPSGQDGRTGPPGPTGPRGQPGNIGFPGPKGPGGEPGKPGEKGP
AGPPGLRGPPGPDGNNGPAGPVGLGGAPGEKGEQGPSGAPGFQGLPGPAGPVGETGKPGD
RGIPGDQGVAGPSGVKGERGESGPAGPPGFAGPPGADGQAGVRGEKGPGGVKGDVGAPGP
AGPAGNTGPLGPSGPVGPPGARGDSGPPGLTGFPGAAGRVGPAGPAGIVGPPGPTGAQGK
DGPRGLRGDVGPAGPQGENGLIGPPGLSGEKGSPGESGPMGPPGIAGPQGQLGSQGFNGL
PGSRGERGLPGAAGSVGEAGRVGPSGSPGPRGPSGNIGLPGMTGPQGEAGREGSPGNDGP
PGRPGAAGIKGDRGEPGSPGPLGIAGAPGPLGPSGAVGRPGNRGEAGSAGPSGAVGPAGA
RGAPGPSGPRGEKGVAGDKGDRGMKGLRGHPGLQGMPGPNGPSGDTGAAGIAGPAGPRGP
AGPNGPPGKDGRSGTHGPIGPAGHRGPPGHVGPVGPPGSPGLAGPPGAAGGGYDVSGGYD
EYRADQAALRAKDYEVDATIKSLNTQIDNLLSPEGSKKNPARTCRDIRLSHPDWTSGFYW
IDPNQGCTMDAIKAFCDFSTGQTCIHAHPESIPRKNWYRSSQEKKHIWFGETINGGTEFG
YNDETLSPQSMATQLAFMRLLANQAVQNVTYHCKNSIAYMDAENGNLKKAVLLQGSNDVE
LRAEGNSRFTFSVLEDGCTRHTGQWSKTVIEYRTNKPSRLPILDIAPLDIGGADQEFGLD
IGPVCFK
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgggtctgatgggagctcgtggccctggtggaccccctggttcgcctggaccccaagga
ctccaaggacatgctggcgagcccggagagcctggacaggctggtgcagttggccctcgt
ggaccccctggacctcctggcaaggccggtgaagatggtaacaatggcagacctggcaag
cccggagacagaggacctgctggagctcagggtgctcgtggattcccaggaactcctgga
cttcctggcatgaagggacacagaggatacaatggtcttgatggacgcaaaggagagcct
ggtgcagctggttctaagggtgagaacggtgctcacggtgctaatggaacccctggacag
agaggaggtcgtggtctgcctggtgagagaggccgtgctggtcctgctggtccagctggt
gctcgtggtgctgatggtaacactggtcctgctggccctgctggtcctctgggagctgct
ggccccccaggtttccctggtgcccctggacctaaaggagagattggagccgctggtgcc
actggcccatccggacctcagggacagagaggagagcctggacccaatggtgctgttggc
cctgttggtcctgctggtaaccctggtgccaatggaatcaatggagctaaaggagctgct
ggtctccccggagttgctggtgcccctggtttccctggcccaagaggaggccctggcccc
cagggaccttctggaccttctggccccagaggccttgctggtgaccctggtcccattgga
gtgaagggagattctggtgtcaagggagagcctggtagctctggtcctcagggtccccct
ggacctgctggtgaggagggaaagagaggagccactggtgagcagggagctaccggacct
gctggccttcgtggaggcagaggagctgctggaactcgtggtcttcctggtttgggtggc
agagctggcccaatgggtatgcctggcccaagaggcgccactggtgctggtggaccccgt
ggaccccctggtgatgctggccgtgctggtgaggctggtctgactggagccagaggtctc
cctggcagccctggcagcggtggacccccaggaaaggagggacctgttggtccttctggt
caagatggtcgcactggcccccctggacctactggacccagaggccagcctggtaacatt
ggattccccggccctaagggacctggaggcgagcctggcaaacccggagagaagggaccc
gctggtccccctggtctgagaggtccccctggtcctgatggcaacaatggccctgctggt
cccgttggacttggtggtgcccctggtgagaagggagagcagggtccctctggtgctcct
ggtttccagggacttccaggacctgctggacctgttggtgagactggaaagcctggagac
agaggcatccccggagaccaaggtgttgctggaccctctggtgtgaagggagagcgtggt
gagtctggcccagctggacctcccggatttgctggaccccctggtgctgatggccaggct
ggagttagaggcgagaagggtcctggtggcgttaagggagatgttggagctcctggccct
gccggtcctgctggaaacaccggacctcttggtccctctggccctgttggcccccctggt
gctcgtggtgacagcggcccccctggtttgactggtttccctggtgctgctggcagagtt
ggacctgctggtcctgctggtattgttggaccacctggtcccactggtgctcaaggtaaa
gatggtcctcgtggtcttcgtggtgacgttggacctgctggacctcagggagagaatggt
ctgattggacctcctggtctgtctggtgagaagggatcccccggagagtctggccccatg
ggaccacctggaattgctggacctcagggtcagcttggatctcagggattcaatggtctt
ccaggatccagaggtgaacgtggtcttcctggtgctgctggttctgtcggtgaggctggc
agagtcggaccttctggttctcctggcccccgtggtcccagtggtaacattggtttgcct
ggtatgactggtcctcagggagaggctggacgtgagggtagccctggtaatgatggccca
cctggccgtcctggtgcagctggcattaagggagatcgtggtgagcccggatctcctggt
cctctcggaattgctggtgcccctggacctcttggacctagcggtgctgttggcagacct
ggaaaccgtggtgaggctggatctgctggaccttctggagcagttggccccgctggagca
agaggtgcacctggaccttctggaccccgtggtgagaagggtgttgctggagacaaggga
gatagaggcatgaagggactgcgtggacaccctggtctgcagggaatgcctggacccaat
ggtccttctggtgatactggtgctgctggtattgctggtcctgctggtcccagaggccca
gctggtcccaatggcccaccaggcaaggatggcagatctggcactcatggtcctattggc
cccgctggacaccgtggacctcctggacatgttggaccagttggacctcccggatctcct
ggtctggccggaccccctggtgctgctggaggcggatatgacgtttctggtggatacgat
gagtacagagctgatcaggctgctctcagggctaaggactacgaggttgatgccaccatc
aagtctctgaacactcagattgacaacctgctctcacctgagggctccaagaagaaccct
gcccgcacctgccgtgacatcaggctcagccacccagactggaccagcggattctactgg
atcgaccccaaccagggctgcaccatggatgccatcaaggctttctgcgacttcagcacc
ggccagacctgcatccacgctcaccccgagagcattccacgcaagaactggtacagaagc
tcccaggagaagaagcacatctggtttggagagaccatcaatggtggaactgagttcggc
tacaatgatgagaccctgagcccacagtccatggctactcagctggccttcatgcgtctc
ctggctaaccaggctgtccagaacgtcacctaccactgcaagaacagcatcgcctacatg
gacgctgagaacggcaacctgaagaaggcagttctgctgcagggctccaacgatgtggag
ctcagggcagagggcaacagccgcttcaccttcagcgttctggaggatggctgcactaga
cacactggccagtggagcaagacagtcattgaatacagaacaaataaaccatctcgcctg
cccatcctcgacattgcacctttggacattggtggcgctgatcaagagtttggtttggac
attggcccagtctgtttcaaataa
DBGET
integrated database retrieval system
