Astyanax mexicanus (Mexican tetra): 103037299
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Entry
103037299 CDS
T05042
Symbol
ddb1
Name
(RefSeq) DNA damage-binding protein 1 isoform X1
KO
K10610
DNA damage-binding protein 1
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03420
Nucleotide excision repair
amex04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
103037299 (ddb1)
09124 Replication and repair
03420 Nucleotide excision repair
103037299 (ddb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
amex04121
]
103037299 (ddb1)
03400 DNA repair and recombination proteins [BR:
amex03400
]
103037299 (ddb1)
Ubiquitin system [BR:
amex04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
103037299 (ddb1)
DNA repair and recombination proteins [BR:
amex03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
103037299 (ddb1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
103037299 (ddb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
103037299
NCBI-ProteinID:
XP_049339201
Ensembl:
ENSAMXG00000030930
LinkDB
All DBs
Position
9:complement(9950580..9991873)
Genome browser
AA seq
1140 aa
AA seq
DB search
MSYNYVVTAQKPTAVNACITGHFTSADDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTAKYNACILEYKQNGDSIDIITRAHGNVQDRIGRPSETGI
IGIVDPECRMIGLRLYDGLFKVIPLDRDNRELKAFNIRLEELQVIDVHFLYGCQAPTVCF
IYQDPQGRHVKTYEVSLKEKEFNKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYH
NGDKYLAIAPPTIKQSTIVCHNRVDPNGSRYLLGDMDGRLFMLLLEKEELMDGSMVLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNDQGSYVAVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSEAGRE
TDDMLVLSFVGQTRVLMLSGEEVEETELPGFVDNQQTFFCGNVAHQQLIQITSGSVRLVT
QDSKALVSEWKEPQGRNISVAACNSTQVVLAVGRVLYYLQILGGELKQISSTEMEHEVAC
LDITPLGESNGESSLCAVGLWTDISARVLRLPCFSPLHKEMLGGEIIPRSILMTTFEGSH
YLLCALGDGALFYFGLDLQTGVLNERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PKRICYQEVSQCFGVLSSRVEMQDASGTTAPVRPSASTQALSSSVSSSKLFPSSTSPHET
SFGEEVEVHSLLVVDQHTFEVLHAHQFLPSEYALSLVSCKLGKDPAIYFIVGTAMVYPEE
AEPKQGRIIVFHYTDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGVFHLGEFVNVFCHGSLVLQNLGES
STPTQGSVLFGTVNGMIGLVTSLSEGWYSLLMDLQNRLNKVIKSVGKIEHNFWRSFNTER
KTEQATGFIDGDLIESFLDLGRAKMQEVVSTLQIDDGSGMKREATVDEVIKIVEELTRIH
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcctacaactacgtggtgacggcgcagaagcccacggcggtgaacgcctgcatcacc
ggccactttacctctgctgacgatctgaacctgctgatagcgaagaacacgcgactggag
atctatgtggtcactgctgagggtttacggcctgtcaaggaggtcgggatgtacggcaag
attgctgttatggaactcttcagacccaaaggagagagtaaggaccttctgttcattttg
actgcaaagtacaacgcctgcattctggagtataagcagaatggagacagcattgacatc
atcactcgcgcccatgggaatgtacaggaccggattgggcgtccctcagaaaccggcatt
attggcattgtggaccctgagtgtcgtatgattggtttgcggctttatgacggtctcttt
aaagtgatccctctggatcgtgataatcgtgaactgaaggcctttaatattcgtctggag
gagctgcaggttatagatgtgcacttcctgtacggctgtcaggcgcctactgtgtgtttc
atatatcaggaccctcagggccgccacgtgaaaacgtatgaagtctctctgaaggagaag
gagtttaataaaggcccctggaaacaagaaaacgtggaggctgaggcctcaatggtcatc
ccagttcctgagccatttggtggagccataatcatcggccaggaatccattacttaccac
aatggagacaaatacctggccatcgcacctccaactatcaaacaaagcactattgtgtgt
cataaccgcgtggatccgaatggttctcggtatctgctgggtgacatggatggaagactg
ttcatgctgctgctggagaaagaggagctgatggacggatccatggtgctgaaagacctg
agagtggagttactgggagagacttccattgctgagtgtctcacatacctggataacgga
gttgtgtttgttgggtctcggctcggagattcccagctagtcaagctgaatgtggacagt
aatgatcagggctcttatgtagcagttatggaaacattcaccaacctgggccccatagtg
gacatgtgtgtagtggacctggagagacaaggtcaaggccagctggtgacgtgttcaggt
gcgtttaaggagggttctctgagaattattcgtaatggaataggaatccacgagcacgcc
agtattgacctgcctggcattaaaggactatggcctcttcgctctgaggccggcagagag
actgacgacatgcttgtgctctccttcgttggccagaccagggtgctgatgctgagtggg
gaggaagtggaagagactgagcttccagggtttgtggataatcagcagacgttcttctgt
ggaaatgtggctcaccagcagctcattcagatcacgtcaggttcagtgcggctggtcacg
caggacagtaaggctctggtcagtgagtggaaggagcctcagggtaggaacatcagcgtg
gctgcctgcaactctactcaggtggtgctggctgtgggcagagtgctgtactacctgcag
atcctcggtggagagctcaaacagatcagctccacagagatggagcacgaggtggcgtgt
ctggacatcactccgctgggggagagtaacggagagtccagcctgtgtgctgtaggcctg
tggacggacatctccgcccgagtcctgcgactgccctgcttcagtcctctgcataaggag
atgctgggaggagagatcattcctcgctcaatcctgatgacgacttttgaaggcagccat
tatttgctgtgtgctctgggagacggtgctctcttctactttggcctcgacttacagaca
ggtgttctgaatgagaggaagaaggtaacgctgggcactcagcccacagtgctgcggacg
ttccgctccctctccacctccaacgtgttcgcctgctcagacagacccacagtcatctac
tccagcaaccacaagctcgttttctccaacgtcaacctcaaagaggtcaactacatgtgt
cctctcaactctgagggatatcctgacagcttggctttagccaataacagcactctgacc
atcggcactatcgacgagatccagaaactccatattcgcactgtacctctttatgaatca
cccaagaggatctgctatcaggaggtgtctcagtgctttggggttctgtccagcagagtg
gagatgcaagatgccagcggcaccacggctcccgtacgccccagtgccagcactcaggct
ctgtccagcagcgtgagctccagtaagctcttccccagcagcacctctcctcatgagacc
tccttcggggaggaggtggaggtgcacagcctgctcgtggtcgatcagcacactttcgaa
gtgcttcacgcccatcagttcttgcccagtgagtatgctctgagcctggtgtcctgcaag
ctgggcaaagatcctgccatctatttcatcgttggcaccgccatggtctaccctgaggag
gctgaacctaagcagggccgtattattgtcttccactacacagatgggaaactgcagaca
gtagctgagaaggaggtgaaaggggctgtttactccatggtggagttcaacggcaagtta
ttggccagcatcaacagcactgtgcgtctttatgagtggaccgcagagaaagagctgagg
acggagtgtaatcactataacaacattatggccttgtatctgaaaaccaaaggagatttt
atactggtgggagacctgatgaggtcagtgctgctgctggcgtacaaacccatggagggc
aattttgaagagattgctcgtgacttcaatccgaactggatgagtgccgtggagattttg
gacgatgataacttccttggagcagaaaacgcttttaatctgtttgtctgccagaaagac
agcgctgccaccacagatgaggagaggcagcatttgcaggaggtgggcgtgttccacttg
ggcgagtttgtgaacgtgttctgtcacggttctctagtcctgcagaacctcggggagagt
tccacacctacccagggttctgtgctcttcggcacagttaacggcatgatcggattagtg
acgtctctgtcagaaggctggtacagtttactcatggatttacagaacaggctcaacaag
gtcattaagagcgtgggcaagatcgagcacaacttctggaggtcgttcaatacggagcgg
aagactgaacaggctacaggcttcatcgacggcgatctgatcgagagctttttagatctg
ggccgagccaagatgcaggaggttgtcagcacgctacagattgatgatggcagtggaatg
aagcgggaggccacggtggatgaagtgattaaaatcgtggaggagctcaccaggatccac
taa
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