Astyanax mexicanus (Mexican tetra): 103037555
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Entry
103037555 CDS
T05042
Symbol
brip1
Name
(RefSeq) Fanconi anemia group J protein isoform X1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03440
Homologous recombination
amex03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
103037555 (brip1)
03460 Fanconi anemia pathway
103037555 (brip1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amex03400
]
103037555 (brip1)
Enzymes [BR:
amex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
103037555 (brip1)
DNA repair and recombination proteins [BR:
amex03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
103037555 (brip1)
FA (Fanconi anemia) pathway
Downstream FA components
103037555 (brip1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ARCH_RTEL1
HBB
Motif
Other DBs
NCBI-GeneID:
103037555
NCBI-ProteinID:
XP_049323144
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All DBs
Position
18:223063..356343
Genome browser
AA seq
1624 aa
AA seq
DB search
MAGSTVEYTIGGVKINFPCKAYPSQLAMMNSIVRGLNHGQHCLLESPTGSGKSLALLCSA
LAWQQAQYGKLGQDGSSCGVKKPGVITPCQCVCHSRAPATHTSSSSSTAFNPALIDNNHT
HTDTPLKAQEDNPSQRTTLSSRLSEKLQASCAANKEEENEEEDGDFRNDRKRIRTPAGDQ
KLNSAFLPQSFDVQQSRKRRCLEKGVVYIDDEDEDKAGSCRVELSSQAERCSPVSCTLCP
CATLGEAQKTGEKTKDKEKDKEKEGNMKKTVPKIFFGTRTHKQITQIARELKRTLYSTVP
MTILSSRDHTCVHPEVMPHANRNERCKELLEAKNGLSCRFYHNVHKMREQSSLQWVHGLH
QAWDIEELVRLGTKLRSCAYYAARELMQEACIVFCPYNYLLDPLIRESMEINLQGQIVVL
DEAHNIEDCARESASFTLNQAQLLQAREEIESLVSYNIRRSNHEPLLAFCCSLLNWVQES
SGSLRERDYESACKVWTGREVLEIFHGFGITAATFPLLQKHLEAVLEKEERIGLVNGRED
TVQVPTIASSTQSVLKSLFMVLEFLFRQNCRFADDYRVALQQSYIWSTQQDAPDAQGFFA
RPQRRRQTRTKTMVHTLSFWCLNPAVAFSDLSDSVRSIVLTSGTLSPMGSFSSELGIKFS
IQLEASHVISQSQVWVGTVGMGPQGRRLCATFQHTETFAFQDEVGALLLKVCQTVSRGVL
CFLPSYKLLDKLRDRWMNTGLWEKLEECKAVITEPRGGAKSDFDELLQTYYEAIRQSGSR
DGALLIAVCRGKVSEGLDFTDDNARAVVTVGIPFPNIKDLQVELKMKYNDQHSKSRGLLP
GGRWYEIQAYRALNQALGRCIRHKNDWGALILVDDRFRSNPNKYITGLSKWVRQLVRHHE
NFTSAMQSLQSFSQSQQGALQSHAQEPGHIVPVSPSVSRTETSALSPPEFPDLSQHLTSQ
DHTALCPVSFPSEPAGAQSLLPPPSDPPVLQSEESKIKSTSRPSFNLFTSTPVSTRLKTP
LFKTRDFKKKDADQSPRSPASCKNLIIPAAVEEEEAQTGSGGEGGGSADKNGLKVIRSDL
PPQQFLLSPVRSVPGCSSISTTSIITISAAAAAAAGPEEDDDYGGGEEEQDERSCFTPEL
FDNDEEEEDGEITVGDENKAPPERGQISCPSSSVTEGHSEDMSCLEQIRKRISLEITDTK
INNDVYKADCVSLNRECVIDQSVAEQTGTSCRTGHEDRDRGQRQRSNSRSHRLSRSRQKA
PSKSAAASGQGSVQQVSAGERKGLRASRRGKQTRGQASSSPSTNRTLIIPRSDLTRDEPV
QIRDRKGKAGESSEAPEPRRTSCSTEPSASSRLQYSKNTANANAKAKVRSARRRAGLESC
STDTVLLKSSADQEQDAVRFEIITPENRSREDPELTEEENQGSGGIRIQRSCVRNSKKIR
KVQKGVCRSRSAQRQKQSSCQSPCMKGLHCASCQTELLPQTQGVVQRAECGSAELSCLLQ
ICRRINETQCSCSPSASTQNTSTSLLLIQNSDALQTLRSTLQPYTSRTLTGLCSYNAVWN
QAQCSVIQLLQCRFCLSCCPDPDHAAVLAADIQNPTDPSLDQIWLVPSALRFCCRIITDQ
GSKQ
NT seq
4875 nt
NT seq
+upstream
nt +downstream
nt
atggctgggagtacagtggagtacactataggaggagtgaaaatcaactttccctgtaaa
gcctacccctctcaactcgccatgatgaattcaattgttcggggtctgaatcacgggcag
cactgtctgttggagagtcccactggcagcgggaagagcctggcactgctgtgttcagcc
ctggcgtggcagcaggcacagtacggaaagctcggtcaggatggatcttcctgtggtgtg
aagaagccgggtgtgatcactccgtgtcagtgtgtgtgtcacagccgagctcccgctaca
cacacttcctccagcagcagcacagcctttaatccagcactgatcgataataatcacact
cacactgatactcctctgaaggcacaagaggacaatccatcccagaggacgactctgtcc
tccagactctccgagaagcttcaggcctcctgtgctgcgaataaagaagaagagaacgag
gaggaagacggcgatttcaggaacgacaggaagcgcattcggactcctgctggggatcag
aagctcaatagcgctttccttcctcaatcctttgatgttcagcagagcaggaagagaagg
tgtctggagaaaggcgtggtttatatcgatgatgaagatgaagataaggcaggaagctgc
agggtggagctgagcagtcaggcagagcgctgttctcccgtgtcctgtaccctgtgcccc
tgtgccactctgggagaagctcagaagacaggggaaaagacgaaggataaagagaaggat
aaagagaaggagggcaacatgaagaaaactgtacctaagatcttttttggaactcgtacc
cataaacagatcactcagatcgcccgcgagctgaagaggacactgtactccaccgtcccc
atgaccatcctgtccagccgagaccatacctgcgtccaccctgaggtgatgccccacgcc
aaccgcaacgagcgctgcaaggagctgctggaggccaaaaacggtctctcttgccggttc
taccataatgtgcataagatgcgggagcagagcagtctgcagtgggtgcacgggctgcac
caggcctgggatatagaggagctggtacgactaggcactaagctgcgctcctgcgcgtac
tacgctgcacgggagctcatgcaggaggcatgcatcgtcttctgtccttacaactattta
ctggaccctcttattcgggagagcatggagattaatctgcaggggcagatcgtggttctg
gatgaagctcataatatagaggactgtgcccgtgagagtgccagcttcaccctgaaccag
gctcagctgcttcaggcccgcgaggagatcgagagcctggtctcctacaacatccgccgc
agcaaccacgagcctctgctggccttctgctgcagcctgctgaactgggtgcaggagagc
tccggttcgctgcgagagcgggattatgagagtgcgtgtaaggtctggacggggagggaa
gttctggagatttttcatggttttggaatcacagctgccacttttccactgctgcagaag
cacctggaggcggttctggagaaagaggaaaggatcggattggtgaatgggagagaggac
accgtgcaggtccccaccatcgcctccagcactcagtctgtgctcaagagcctcttcatg
gtgctggagttcctgttccgacagaactgcaggtttgcagatgattatcgtgtggccctg
cagcagagttatatctggagcactcagcaggacgctcctgatgctcagggttttttcgct
cggccgcagcgccgccgtcagactcgcactaaaaccatggtgcacactctgagcttctgg
tgtcttaaccctgctgtggcgttctctgatctgagtgattcagtgcgcagtatagtgctc
acatccggtactctttctccgatgggctccttctcctcagagctcggcatcaaattctcc
atccagctggaggccagccacgtcatcagccaatcacaggtgtgggttggtacagttgga
atgggtcctcagggtcggaggctgtgtgctacgtttcagcacacggagacgtttgcgttt
caggatgaggtgggggcgctgctgctgaaggtgtgtcagactgtgagtcggggagtgctc
tgcttcctgccctcatacaagctgctggataagctgagggatcgctggatgaacacgggt
ctgtgggagaagctggaggagtgtaaggccgtgatcacagagccaagaggaggagccaag
agcgacttcgatgagcttctgcagacttactatgaggccatacggcaaagtggatccaga
gatggagctctgctgatcgctgtgtgcagagggaaagtgagtgaggggctggacttcact
gatgataacgcgagagcagtggtcactgtcgggattcccttccccaacatcaaagacctt
caggttgaactgaagatgaaatataatgatcagcattccaaatccagaggtcttctacct
ggaggtcgctggtatgagatccaggcatatcgagctttaaaccaggctttaggaaggtgc
attcggcataaaaacgactggggggctcttattctagtagatgaccgttttagatccaac
cccaacaagtacatcacaggcctgtcgaaatgggtccgtcagctggtgagacatcacgag
aacttcaccagcgccatgcagtccctgcagtccttctcccagagccaacagggggcgctg
cagagccacgcccaggagcccggacacatcgtccccgtgtctcctagtgtctccaggacc
gagacatcagctctgtcccctcctgaattccccgacttatctcaacacctgacctctcag
gatcacacggccctgtgtcccgtcagcttcccatctgaaccagcaggcgcccagtcactt
ttacctccaccctctgatcctccagtcctccagagtgaagaatccaaaatcaaatccaca
tcacgaccttcatttaacctcttcacctccactcccgtcagcacccgcctgaaaacacct
ctctttaaaaccagggactttaaaaagaaggatgctgatcagagccccagatctccagca
tcctgtaaaaacctcatcattccagcagctgtggaggaagaagaagctcagacgggaagt
gggggagaaggaggaggaagtgctgataaaaacggactaaaagtgataagatctgatctt
cctcctcaacagttcctcttatctccggtaagatctgtccctggatgcagcagcatcagc
accaccagcatcatcaccatcagtgctgctgctgctgctgctgcaggtcctgaagaagat
gatgattatggaggaggagaagaagagcaggacgagaggtcctgcttcaccccagagctc
tttgataatgatgaggaggaggaagatggtgagataactgtaggagatgagaataaagct
cctcctgagaggggacagatctcctgtccttctagttcggtcactgagggacattctgag
gacatgtcctgcttggagcagatcaggaaaaggatcagccttgaaattactgatactaag
atcaataatgatgtttataaagctgactgtgtttctctgaacagagagtgtgttatagat
cagagtgtagcagagcagacagggacgagctgtaggacaggacatgaggacagggacaga
ggacaaagacagcgcagtaatagcagatcacacaggctctccaggtctagacagaaagct
cccagcaaatcagcagcagcttcaggtcagggatcagttcagcaggtcagtgcaggagaa
aggaagggattgagagcgtcccgacgaggaaagcaaaccaggggtcaagcgagttcttca
ccttcaacaaaccgaactctaataatccctcgttcagacttgacccgagacgaaccggtt
cagatcagggacaggaaggggaaagcaggagaatcctctgaagctcctgaaccccggaga
acctcctgctctacagagccctcagcctcctcccgcctgcagtacagcaaaaacaccgct
aacgctaatgctaaagctaaagttcggtcagcgagacgcagagcaggactcgagtcctgc
agcactgatacggttctgctgaagagctcagctgatcaggagcaggacgctgtgagattt
gagatcatcactccggagaacaggagcagagaagatccagaactaacagaggaggagaat
cagggatcaggagggattaggattcagagatcctgtgtgaggaacagtaagaagatcaga
aaggtgcaaaaaggagtttgtagaagcagatctgctcagagacagaagcagtcttcctgc
cagtccccctgtatgaaaggacttcactgtgcttcctgccagactgagctcctgccccaa
acccaaggtgttgttcagagagcagagtgtggatcagctgaactgtcctgtttactgcag
atctgcaggaggataaacgagactcagtgttcatgcagcccctcagcatccacccagaac
accagcacatcactattactgatccagaatagtgacgctctacagaccctacgctccact
ctacagccttacacatcccgcactctaacaggtctgtgttcatataacgcagtgtggaat
caggctcagtgttcagtgattcagctgcttcagtgtcggttctgtctgtcctgctgtccg
gatccagatcatgctgctgtcctcgctgctgatatccagaacccaacagacccgtccctg
gaccagatctggttggttccctcagcgcttcgattctgctgtaggatcatcactgatcag
ggaagtaaacagtga
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integrated database retrieval system
