Astyanax mexicanus (Mexican tetra): 103037644
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Entry
103037644 CDS
T05042
Symbol
rbm39b
Name
(RefSeq) RNA-binding protein 39b isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
amex03041
]
103037644 (rbm39b)
Spliceosome [BR:
amex03041
]
Common components
Common spliceosomal components
General mRNP proteins
103037644 (rbm39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RRM_5
RRM_7
Motif
Other DBs
NCBI-GeneID:
103037644
NCBI-ProteinID:
XP_022526378
Ensembl:
ENSAMXG00000012946
UniProt:
W5L0G2
LinkDB
All DBs
Position
12:20226503..20238030
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AA seq
563 aa
AA seq
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MADDFDIEAMLEAPYKKTCLMISDLYFPEYTFDSSVKCEKRRDVRQRWHRTLKVQPHKWG
DSKSSSANGHDEHSRKKRRSRSPSADHHRSRSKDRKKSKDRRRSRSHEKKRSRSKERRRS
RSRSHERYGRGSQYRGRKSPYLGPKFNGGPGGKIGPPTKLSHKHNRSKSPFKKDKSPVRQ
PIDNLSAEERDSRTVFCMQLAARIRPRDLEEFFSAVGKVRDVRMISDRNSRRSKGIAYVE
FVEASSVPLAIGLTGQRLLGVPIIVQASQAEKNRAAAALQNLQKGGAGPMRLYVGSLHFN
ITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFISFADAECAKKALEQLNGFELAGRP
MKVGHVTERSDASSASSFLDNDELERTGIDLGTTGRLQLMARLAEGTGLQIPAAAKQALQ
MTGSLPFGNLPGANPALIPSPSMNQAMNLPTQPLATHCLQLSNMFNPQSENEPGWDTEIQ
DDVIEECNKHGGIVHIYVDRNSAQGNVYVKCPTIPTAMAAVSALHGRWFAGKMITAAYVP
LPTYHKLFPDSVTATQLLMPTRR
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgactttgatatagaagccatgcttgaggctccttacaagaagacttgccta
atgatatctgacctctacttccctgaatacacctttgattccagtgtgaagtgtgaaaaa
agacgagatgtgagacaaagatggcatcgcactctcaaagtccaaccacacaaatggggt
gacagcaagtcttctagtgcaaatggacatgatgaacacagcagaaagaaaagacgcagc
cggagcccgagcgcagatcaccataggagtaggagcaaggaccgcaagaaaagcaaggac
cgccgcaggagccgcagccatgagaaaaagcgctcacgcagcaaagagcgtcgccgctca
cgctcccgcagtcatgagcgttatggcagagggtcgcaatatcgaggtcgcaaaagcccc
tacttggggccgaaatttaacggtggtcctggagggaagattggcccacccaccaaacta
agccacaaacacaatcgaagcaaaagcccctttaaaaaagacaagagtcctgtcaggcag
cccattgataatctcagtgctgaagaaagagattcccgtacagttttctgcatgcagctg
gctgccagaattagaccaagagacctagaggaattcttctctgctgttggaaaagtgcga
gatgtgaggatgatttcagacagaaactctcgcaggtctaagggtatcgcttatgttgaa
tttgtggaagcatcgtctgtgccgctggcaattgggcttacaggacagaggctgctggga
gtgcccatcattgttcaggcctcacaggctgaaaagaacagggcagcagctgccttgcaa
aacctgcagaaaggtggtgcagggcctatgcgcctctacgtgggatctctgcactttaac
atcactgaggacatgctccgaggcatctttgagccttttggcaggatcgagagcatccag
ttgatgatggacagcgagacgggcaggtcaaaaggttatggcttcatatcatttgcagat
gctgaatgtgcaaagaaggccctggaacagctgaatggcttcgagctggctggccggcct
atgaaagtggggcacgtgacggaacgctcagacgcctcatctgccagctccttcctagat
aatgatgagctggagagaacaggcatagatttgggcaccacaggccgcctgcagcttatg
gctcgacttgcagaaggcactgggctacagattcctgccgctgcaaagcaggccctgcag
atgaccggctctctgccattcggtaacctacctggagctaaccctgccctgatccccagc
cctagcatgaaccaggcaatgaacttacccactcaaccactggcaactcactgcctgcag
ctctccaacatgttcaacccacaatctgaaaacgagcctggctgggacacagaaattcag
gatgacgtcattgaagagtgcaataaacacggcgggattgtacacatatatgtggacagg
aattctgctcaaggtaatgtatatgtgaagtgtcccaccattcctactgccatggctgct
gtcagtgccctgcacggacgatggtttgcaggcaaaatgatcactgctgcctatgtgccc
ctccccacctatcacaagctgttcccagattcagtgactgctacacagttgttgatgccc
acacgtcggtga
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