Astyanax mexicanus (Mexican tetra): 103038041
Help
Entry
103038041 CDS
T05042
Symbol
ddx56
Name
(RefSeq) probable ATP-dependent RNA helicase DDX56
KO
K14810
ATP-dependent RNA helicase DDX56/DBP9 [EC:
5.6.2.7
]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
amex03009
]
103038041 (ddx56)
Enzymes [BR:
amex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103038041 (ddx56)
Ribosome biogenesis [BR:
amex03009
]
Eukaryotic type
Pre-60S particles
Helicases
103038041 (ddx56)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Phage_YunG-like
Motif
Other DBs
NCBI-GeneID:
103038041
NCBI-ProteinID:
XP_022536589
Ensembl:
ENSAMXG00000019357
LinkDB
All DBs
Position
20:2364916..2373029
Genome browser
AA seq
561 aa
AA seq
DB search
MADDRLCFHEMGLDDRLLKAIADLGWAQPTLIQEKAVPLALEGKDLLARARTGSGKTAAY
AIPVIQQILTSKQTVQGEQAVRALILVPTKELGHQVQTMIRQLTAYCAKDVRVADISGKT
ELSAQKPILMEKPDIVVGTPSRVQVHISAQNLVLHSSLEMLVIDEADLLFSFGFEADLKN
LICHLPKIYQAFLMSATLSDDVQALKELVLHNPVTLKLEGSNLPGSAQLQQYTVKCEEDE
KFLVIYALLKLGLVRGKTLIFVGTLDRCYKLKLFLEQFGIPACVLNSELPVHSRCHIISQ
FNQGFYDYIIATDEQVLSIPSASSQSAEDKGKKKKKKKNGKNKTGKDKEYGVSRGVDFQN
VANVINFDFPTSVESYIHRVGRTARADNRGTALSFVAHSELSVLEEVEASLTGDNADCAL
KPYAFKMEEIQGFKYRCQDAMRAVTRQAVKEARIKEIKQELLNSQKLKMYFEDNPRDLQL
LRHDKALHPAAVKPHLRNVPEYLIPSTLQNRVNPLLRRKNKKKLKLIAKGVIKTPFKRKF
RGKDPLKSFRFTGKKSKPKTE
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgacaggctctgtttccacgagatgggtttggatgatcgtcttttaaaggcg
atcgcagacctgggctgggctcagccgaccctcattcaggagaaagccgttcctctggct
ctggagggaaaggatcttttggccagagctcgaaccggttcaggaaaaacagcggcttac
gccattcctgttatccagcagatcctcacctctaaacagactgtgcagggggagcaggcg
gtcagagctctgattctggttcctactaaagaactgggacatcaggtgcagacaatgatc
cggcagctcactgcatactgcgctaaagatgttcgggtggcagatatctcaggaaaaact
gaattatctgcacagaagcccattctaatggaaaagcctgatattgtggtgggaactcca
tcgcgagtgcaggtccacatttctgctcagaacctggtgctgcactcgtctctggagatg
ctggtcattgatgaggctgatcttctgttctctttcggttttgaggctgatcttaaaaac
ctcatctgtcacttacccaagatctaccaagctttcctgatgtctgctactctcagtgat
gacgttcaggccttgaaagagttggttctgcacaatccagtgaccctgaagctggaaggc
tcgaacctgccgggcagcgctcagctgcagcagtacacggtgaaatgtgaggaggacgaa
aagttcctggtgatttacgctctcctcaaactgggcctggtccgcggcaagaccctcatc
ttcgtgggcacgctggaccgctgctacaaactcaagctcttcctggagcagttcggcatt
cctgcctgcgtgctgaactctgagctgcccgttcactccaggtgtcacatcatctcacag
tttaaccagggattttatgattacatcatcgctacagacgagcaggtgctcagtatccca
tcagcctcctctcagagcgccgaggacaaaggaaagaaaaagaagaagaagaagaatggg
aagaataaaacgggtaaagataaagaatacggcgtgtccagaggggtcgatttccagaac
gtggcgaatgtgatcaactttgattttcccacatctgttgaatcttatatccacagagtt
ggcaggacggctcgagcagacaaccgtggcaccgccctgtccttcgtcgcccattcagag
ctgtctgtgctggaagaggttgaagcttctcttactggagacaatgcagactgcgcactg
aagccatatgcattcaaaatggaggaaatccagggatttaaatacagatgtcaggatgcc
atgcgtgccgtcaccagacaggcggtgaaggaggccagaataaaggagataaagcaggag
ctgctgaactctcagaaactgaagatgtacttcgaagacaaccccagagatctgcagctt
ctgcgccacgacaaagcgcttcaccctgccgccgtcaaaccccacctgcgcaacgttccc
gaatacctgattccttccacattgcaaaacagggttaatcctcttctgcggagaaagaat
aaaaagaagttgaagctcatcgcaaaaggggttatcaaaactccgtttaagaggaaattc
agggggaaggacccgctgaagagtttccgcttcacaggaaagaagagcaaacccaaaacc
gagtga
DBGET
integrated database retrieval system
