KEGG   Astyanax mexicanus (Mexican tetra): 103038308
Entry
103038308         CDS       T05042                                 
Symbol
kdm5a
Name
(RefSeq) lysine-specific demethylase 5A isoform X1
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
amex  Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:amex00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:amex01009]
    103038308 (kdm5a)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:amex03036]
    103038308 (kdm5a)
Enzymes [BR:amex01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     103038308 (kdm5a)
Protein phosphatases and associated proteins [BR:amex01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     103038308 (kdm5a)
Chromosome and associated proteins [BR:amex03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    103038308 (kdm5a)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel PHD ARID zf-C5HC2 PHD_5 PHDvar_NSD
Other DBs
NCBI-GeneID: 103038308
NCBI-ProteinID: XP_049329534
Ensembl: ENSAMXG00000017813
LinkDB
Position
2:16785409..16809196
AA seq 1726 aa
MTFLFFLSCQKGQQDFIQTVFGGVFGAFRRGTQWKRFHCSYRRPQSWRRENEIVPCVSDW
QPPFACDVRNFRFTPRVQRLNELEALTRIKLNFLDQIAKFWELQGSKLRFPHVEKKILDL
YLLSKLVSAEGGFELVCKEKRWSKIASRMGFPSGKGSGTLLRSHFQRILYPYELFQSGAS
FTGVHRLYPEGDESEDIDEGIEGGCEEEEDEEEEKPREKEGQERDCLGDRPQNKEQPVPE
RRSRRLKSEVSSQRENKEPKTLQIFGSSPKVVGLEIVPADDGFIKKQRHLKAQAFAIKMR
PRKETLEVNFIDLYMCMACGRGDEEDRLLLCDGCDDSYHTFCLIPPLQDVPKGDWRCPKC
VAEECSKPREAFGFEQAVREYTLQSFGEMADHFKSDYFNMPVHMVPTELVEKEFWRLVSS
IEEDVIVEYGADIGSKDVGSGFPVRDGKRRLVGDEEEYANSGWNLNNMPVLEQSVLTHIN
ADISGMKVPWLYVGMCFSSFCWHIEDHWSYSINYLHWGEPKTWYGVPAHAAEQLEAVMKK
LAPELFDSQPDLLHQLVTIMNPNVLMEHGVPVYRTNQCAGEFVVTFPRAYHSGFNQGYNF
AEAVNFCTADWLPMGRQCVAHYRRLQRQCVFSHEELLCKMAADPESLDVELAAAVYKELG
DMMDEESRLRQAVSDMGVLSFEQEVFELVPDDERQCYKCKTTCFLSALTCPCSPDRLVCL
HHTADLCDCPLTSKCLRYRYDQEEFPAMLYGVKSRAQSYETWAKRVTEALAADHKNKKDL
IELKVLLEDAEDRKYPENNLFRKLREMVKEAETCSSVAQLLLSHKQRHKRERTESSRIRT
KLTVEELKAFVEQLFRLPCIINQARQVKELLENVEDFHERSQVALTDETPDSSKLQALVD
LGSGLDVELPELPRLKQELQQARWLDEVRLTLQEPQRVTLELMKRLIDSGVGLAPHHAVE
KAMAELQEILTVSERWEDKARACLQARPRHSMITLENIVMEAKNIPAYLPNVLALREALH
KAKEWTSRVEAIQNGSNYAYLDQLEALLARGRSIPVRLDALPQVESQVASARSWRERTAR
TFLKKNSTYTLLQVLSPRTDIGVYGNSKSKRKRAKELLEQERGLELDSLSDLDESLEEAR
EPSAVVAAFKAKEQQEVEAIHSLRAANLAKMAMADRIEEVKFCLCRKTAVGFMLQCELCK
DWFHGACVPLPKTGSQKKLVAGWQGSNKESKFLCPLCQRSRRPRLETILSLLVSLQKLPV
RLPEGEALQCLTERAMSWQDRARQALATDELSSALAKLSVLSQRMVELAAREKTEKIINA
ELQKAAANPDLQGHIQTFQQAGFSRATSPRPSLDYDDEETDSDEDIRETYGYDMKDSGEV
KPYLFCDEEIPVKSEEVVSHMWPATPSFCAEHAYSSASKSCPQNQTTPRKQPRKTPLVPR
SLEPPVLELSPAAKAQLEELMMEGDLLEVSLDETQHIWRILQATHPPSEERFLQVMESED
AMLEKPMKLKLKDVEKKRKRKLERAEQQLLLATTGVDGRPKCKDTKRVLEVGGKPKKKKL
KLNPDRSRELKQLAKRLAKEEKERKRKEKAAAKAEFAKEGLERKKEKKVLDIPSKYDWSG
AEDSNDENAVCAAKNCQRPCKDKVSVDWVQCDGGCDEWFHQVCVGVSCEMAENEDYICTA
CSRKAAGITGGGMGVKVGVETVVMTSPISSTQTLSPVPQPEPQEGS
NT seq 5181 nt   +upstreamnt  +downstreamnt
atgacttttctcttcttcttaagttgccagaaaggacagcaggacttcatccagactgtt
tttgggggtgtttttggtgcgttcagacgtggcacgcagtggaaacggtttcattgttcg
taccgaaggccacaatcatggcgaagagaaaatgaaatagttccttgtgtgtctgactgg
cagccaccgtttgcttgtgatgtgcgcaacttccgctttactcctcgagtccaaaggctc
aatgaacttgaggctctcaccagaatcaagcttaatttcttggatcaaatcgcgaagttc
tgggagctccagggttctaaactacgttttccacatgtggagaaaaagatcctggacttg
taccttcttagcaagcttgtgtctgctgaagggggttttgaactagtctgtaaggagaag
cgctggtcaaagatagccagtcgaatggggttcccctctgggaaaggctctgggaccttg
cttcgctcgcactttcagaggattctctacccatacgagcttttccagtctggagcttca
ttcacaggcgttcaccgtttgtacccggagggagatgaatctgaggatatagatgaagga
atagagggtggatgtgaagaagaggaggatgaagaagaggagaaaccgagagagaaggaa
ggccaggaacgggattgtctgggtgacaggccgcagaataaagagcagcctgtacctgag
agacgatctcggcgcctcaaatcagaggttagttcccagagagagaacaaagagcctaaa
accctgcagatctttggcagcagtcctaaggtggttggtctggagattgttccagccgat
gatgggtttattaagaagcagaggcatctcaaggctcaagcgtttgccattaagatgcgt
ccccgcaaagagactctggaagtcaattttattgacctgtacatgtgtatggcttgtggg
cggggagatgaagaggaccgcctcctgctgtgtgacggttgtgatgacagttaccacacc
ttctgcctgatccctccccttcaagatgttcccaagggtgactggcgttgtcccaaatgt
gtggcagaggaatgcagtaagcctcgggaggcgtttggtttcgagcaggcagtacgagaa
tacactctccagagttttggcgagatggcggaccactttaagtctgactacttcaacatg
ccagttcatatggtgcctacggagctggtggagaaggagttttggaggctggtgagcagt
atagaagaagacgtgatagtggagtatggagcggatatcggctccaaagatgtgggcagt
ggatttcctgtccgagatgggaaaagaagacttgtaggggatgaagaggaatatgctaat
tcgggctggaacctgaataacatgccagtgctggagcagtctgttctcacccacatcaat
gcagacatctctggtatgaaggtgccgtggctctatgtgggtatgtgcttttcatccttc
tgctggcacattgaggaccactggagctactcaatcaactacctgcactggggggagcca
aagacctggtatggagtcccagcacatgcagcagagcagctggaggcggtaatgaagaag
ttggccccggagctattcgactcacagccagacctgcttcaccagctagtcaccatcatg
aaccctaacgttcttatggagcatggtgttccggtgtatcggaccaatcagtgcgctggg
gagtttgtggtaacctttccgagagcctatcacagtggcttcaaccagggatacaacttt
gctgaagctgtcaacttctgtactgcagattggcttccaatgggacgccagtgtgtggca
cactacaggcgtttacagcggcaatgtgtattctctcatgaggagctgctgtgcaagatg
gccgcagacccagagagccttgatgtggagcttgctgctgctgtgtacaaagagctggga
gacatgatggacgaggagagcaggcttcgacaggctgtcagtgacatgggggtgctgtct
tttgagcaagaggtgtttgaacttgtcccagatgatgagaggcagtgttacaaatgcaaa
accacttgtttcctgtctgcgctgacctgcccatgcagccctgatcgcctggtgtgtctt
caccacacagctgacctctgtgactgtcctctcaccagcaagtgtctcaggtacaggtat
gatcaagaggaattccctgctatgctgtatggggtaaagtcacgtgcccagtcctacgag
acctgggccaagagagttactgaagcactggctgctgatcacaaaaacaagaaagatctg
atcgaactgaaggtcttgctggaggacgcggaggacagaaagtacccagagaacaatttg
ttccgcaagctgagagagatggtgaaggaagccgagacctgttcctctgtggcccagctg
ctgctcagccacaagcagagacacaaaagggagcgcacagagagcagccgaatacgaacc
aagctaaccgtggaggagctgaaagcatttgtggagcagctgttccgcctgccctgcatc
attaaccaggcacgccaggtcaaagagctgctggagaatgtagaagacttccatgagcgt
tcacaggtggctttgacagatgagaccccagattcgagtaagctgcaggctttagtggac
ctgggttctgggctggacgtggagctgcctgagctgcctcggctaaagcaggagctacag
caggcacgctggctggacgaggtgcgcctcaccctgcaggaaccccagcgagtcactctg
gagcttatgaagcgtctgattgactcaggtgtgggtctagcaccgcaccatgctgtggag
aaagccatggcagagctgcaggaaatcctcacagtgtctgagcgctgggaggacaaagcc
cgtgcctgcttgcaggccagacccaggcacagcatgatcaccctggaaaacattgttatg
gaggccaagaacattcctgcctacctgcccaatgtgttggccctcagagaagcactccac
aaagccaaagaatggacgtccagagtggaggctatccagaatggcagtaattatgcttac
ctggatcaactggaggcgctgttagcgagggggcgctctatcccagtgcgtctggatgcg
ctgccgcaggtcgagtcccaggtagcctcagcacgatcttggagagagaggacagctcgc
actttccttaagaagaactcaacctatactcttctccaggttctaagcccccgtacagac
attggcgtatatggcaacagtaaaagcaagcgcaagcgagcgaaggagctgctggagcag
gagcgtggactagagctcgacagcctgagcgacctggatgaaagccttgaagaggcacgt
gaaccctctgctgtagtggctgccttcaaggccaaggagcagcaagaggtagaagccatc
cactccctacgtgccgccaacctggccaagatggccatggctgaccgtatagaggaggtc
aagttctgcctgtgtcgtaaaacggcagtgggcttcatgcttcagtgcgaactgtgtaag
gactggttccacggtgcctgtgtgcccctacccaaaacaggctcgcagaagaagctggtg
gctggctggcagggcagcaataaggagtcaaagtttctatgtccgctatgtcagcgttcg
cggcggccccggctagaaaccatcctctcgctgctggtgtcgctgcagaagctgcctgtg
cggctccctgaaggtgaagcgctccagtgtttgacggagcgagccatgagctggcaggac
cgagcacggcaggccttggccactgatgagctctcgtctgccttggccaagctatctgtg
ctcagtcagcgcatggttgagttggctgcacgtgagaagactgagaagatcatcaacgca
gagttacagaaggctgcggccaacccagacctgcagggacacattcagacattccagcag
gcgggattcagcagagccacctctccacggccatcgctggactacgacgatgaggaaacg
gactcagacgaggacatccgcgagacttacggctatgatatgaaggattctggtgaggtg
aagccctacttgttctgtgatgaggagattcctgtgaagtcagaagaagttgtcagccac
atgtggccagccacaccgtcattctgtgcagaacatgcctactcttctgcctccaagtct
tgtcctcagaaccagaccaccccacgcaagcagcccaggaagacgcccctggtgccccgc
agtttggagccaccagtactagaactgtctccagctgcgaaggcccagctggaggagctt
atgatggaaggggatctgctggaggtctctctggatgaaactcagcacatctggaggatt
ctgcaggccacccacccaccatcagaggaacgcttcctgcaggtcatggagtcagaagac
gctatgctggagaagccaatgaagctgaagctaaaggatgtggagaagaagaggaaaagg
aagctggaaagagctgaacaacagctactactggctaccacaggagtggatggccgaccc
aaatgcaaagacacaaagagggtgctggaggtgggcggtaaacccaagaaaaagaagctc
aagctaaacccagacaggtcgcgtgagctcaagcagctggccaaacgcctcgccaaggaa
gagaaagagaggaagaggaaggagaaagctgcagccaaggcagagtttgcgaaggaagga
cttgagcgcaagaaggagaagaaggtcttggacattccttcaaagtatgactggtctggt
gcagaggactccaatgatgaaaatgctgtgtgtgcggcgaagaactgccagaggccgtgc
aaggacaaggttagtgtggattgggttcagtgtgatgggggatgtgatgagtggttccat
caggtgtgtgtaggcgtgtcatgcgagatggctgagaatgaagactacatctgcacggct
tgttcccgaaaggctgcaggcatcactgggggagggatgggcgttaaagtaggtgtagag
actgtggtaatgacgtcgcccatctccagcacccagacactgtcccctgtaccccagcca
gagcctcaggagggcagctag

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