Astyanax mexicanus (Mexican tetra): 103038321
Help
Entry
103038321 CDS
T05042
Name
(RefSeq) calcium-activated potassium channel subunit alpha-1-like isoform X1
KO
K04936
potassium large conductance calcium-activated channel subfamily M alpha member 1
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
103038321
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
amex04040
]
103038321
Ion channels [BR:
amex04040
]
Voltage-gated cation channels
Potassium channel, calcium- and sodium-activated (KCa/KNa)
103038321
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slo-like_RCK
Slowpoke_C
BK_channel_a
Ion_trans
Ion_trans_2
TrkA_N
Motif
Other DBs
NCBI-GeneID:
103038321
NCBI-ProteinID:
XP_049320465
Ensembl:
ENSAMXG00000004398
LinkDB
All DBs
Position
15:16235885..16398090
Genome browser
AA seq
1230 aa
AA seq
DB search
MTNLVSSEVSNRRNRMDVVIPYTSDVPCDSNGQRMWWAFLASSMVTFFGGLFIILLWRTL
KYLWTVCCHCNVKKKDVQRVINPIGAGDGVGKVGDKKEAAAAVSEVGWMTSVKDWAGVMI
SAQTLTGRVLVVLVFALSIGALVIYFIDSSDPIESCQIFDEDITLQIDMAFNIFFLLYFG
LRFIAANDKLWFWLEVNSVVDFFTVPPVFVSVYLNRSWLGLRFLRALRLIQFSEILQFLN
ILKTSNSIKLVNLCSIFISTWLTAAGFIHLVENSGDPWENFQNSQPLSYWECVYLLMVTM
STVGYGDVCAKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGSYSAVNGRKHI
VVCGHITLESVSNFLKDFLHKDRDDVNVEIVFLHNISPNLELEALFKRHFTQVEFYQGSV
LNPHDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHN
KAHLLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSFIKIEEDTWQ
KYYLEGVANEMYTEYLSSAFVGLSFPAVCELCYVKLKLLLIAIEYKSDQRESSTLINPGN
HVKMQEGTLGFFIASDAKEVKRALYYCKACHDDITDPKRIKKCGCKRSKKACRRGTRLAC
CLDCGEADYGCLCMSRSVRSNAETAFPLSPTCLSDNSATLRSSKSNYNGYIKSIEEVHQS
TLSPKKKQRNGGMRTSPNCSPKNLRHDPLLIPSHDQMETMDVNVKKYDSTGMFHWCPSKD
IEKVILTRSEAAMTVLSGHVVVCIFGDVKSAVVGLRNLVMPLRASNFHYHELKPIVFVGS
LEYLKREWETLHNFPKVSILPGSPLSRADLRAVNINLCDMCVILSANQNNIDDASLQDKE
CILASLNIKSMLFDDSIGLLQANSQGFTPPGMDRSSPENSPVHGLVRQTSVTTGANIPII
TELAKSDRLLNAVCVRQDKSIGTNIPMITELVNDSNVQFLDQDDDDDPDTELYLTQPFAC
GTAFAVSVLDSLMSATYFNDNILTLIRTLVTGGATPELEGLLAEENALRGGYSTPQTLAN
RDRCRVAQLALYDGPFADLGDGGCYGDLFCKALKTYNMLCFGIYRLRDAHLSAPSQCTKR
YVITNPPYEFELVPTDLIFCLMQFDHNAGQSRATLSHSSHSSHSSSKKSSSVHSVNTSTR
AGRSKSREPRDKQNAAWKSRGGVTEDSIPR
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atgaccaacctggtgtccagcgaggtgtccaacaggagaaacaggatggatgtggtcatc
ccgtacacttcggatgtgccatgtgacagcaacgggcagcgcatgtggtgggctttcctg
gcctcctccatggtcactttcttcggtgggctctttatcatcctgctgtggaggaccctc
aagtacctgtggaccgtctgctgccactgcaatgtcaagaagaaggatgttcagagggtc
attaaccccattggagcaggtgatggagtcggtaaagttggagacaagaaggaagcggct
gcggcggtcagcgaggtgggctggatgacctcagtgaaggactgggccggggtcatgatc
tctgcgcagacgctgaccggacgagtgctggtggtgctggtgttcgccctcagcattgga
gcgctggtcatctacttcatcgactcttctgatccgatagaatcatgtcagattttcgat
gaggacatcacgctgcagatcgacatggcgttcaacatcttctttctgctgtacttcggc
ctgagattcattgcggctaatgataagctgtggttctggttggaggtgaattcggtggtg
gatttcttcacggtgccgccagtgttcgtgtcggtgtatctgaaccggagctggctggga
ctgaggtttttacgagccttaagattgatacagttctcagaaatattacagtttttaaat
atcttaaagactagcaattccataaagttggtgaatttgtgctcaatcttcataagcaca
tggctaactgctgcaggcttcatacacttggtggaaaactcaggggatccttgggaaaac
ttccaaaattcccaaccactttcctactgggaatgtgtgtacttactcatggtaaccatg
tccacggtgggctatggagatgtttgtgctaaaacgacgctcggccgccttttcatggtc
ttcttcatcctcggcggattggccatgtttgccagctacgtccctgaaatcatagaatta
ataggaaaccgcaagaaatatggtggttcctatagtgcggtaaatgggagaaagcatatt
gtggtgtgtggtcacatcactttggaaagtgtttccaacttcctcaaagacttcctccac
aaggacagggacgatgtcaatgtagaaattgtttttctccataatatttcccctaatctt
gagctggaagccttattcaaacggcacttcactcaggtggaattctaccagggatccgtc
ctaaatccccacgacctagcaagagtgaagattgagtcagcagacgcctgtttgattctc
gccaataaatattgtgcagaccctgatgcagaagatgcatcaaatatcatgagagtaata
tctatcaagaactatcatccaaagatccgaatcatcacacagatgctgcaataccataac
aaggctcacctgctgaacattccgagctggaactggaaggagggggatgatgcgatctgc
ctggccgagctgaagctaggcttcatcgctcagagctgcctggcccagggcctgtccacc
atgctggccaacctcttctccatgaggtcattcatcaagattgaagaggacacgtggcag
aaatattatctggaaggagtcgccaatgaaatgtacacagagtatctgtccagtgccttt
gtggggttatctttccctgcggtctgtgaactctgctacgtgaagctgaagctcctgttg
atagccattgagtataagtctgaccagagagagagcagtacgttgattaatccaggaaat
catgtgaagatgcaggagggaacgctgggcttcttcatcgccagtgatgccaaagaagtg
aagagggccctttactactgcaaagcctgccatgatgacatcacagatccgaaaaggata
aagaagtgtgggtgtaaacgatctaagaaggcctgcaggcgtggaacgcgactggcatgt
tgtttagattgtggagaggcagattacggctgcttgtgcatgtcccgcagtgtccgcagc
aatgcggagactgcctttcctctgtcacccacctgtcttagcgataattcggcaactttg
cgctcctctaaaagtaactataacggatatatcaaatcaattgaggaggtccaccagtcc
actctgtccccgaagaagaaacagcgcaatggaggaatgagaacatcacccaactgctcc
cccaaaaacctcagacatgaccctctcctgatccccagtcatgatcagatggagacgatg
gacgtgaacgtgaagaaatatgactccacagggatgtttcactggtgcccgtccaaagac
atcgagaaggtcatactgactcgcagtgaggcagcgatgacggtgctgagtggtcacgtg
gtggtgtgtatatttggggacgtgaagtcggcagtggttgggctgaggaacctggtgatg
ccgctgagggccagtaactttcattaccacgagctgaagcccatcgtgttcgtgggctct
ctggagtatctgaagcgggagtgggagacgctccacaacttccccaaagtctccatactg
cccggcagtcctctgagcagagcagatctgagggccgtcaacatcaacctgtgcgacatg
tgtgtgatcctgtcggccaatcagaacaacatcgacgacgcgtccctgcaggataaggag
tgtatcctggcctccctcaacatcaaatccatgctgtttgatgacagcataggtcttctg
caggccaactcacagggctttactcctcctggaatggaccgttcatctcctgagaacagt
ccagttcacggcctcgtgcgccagacctccgtcacaacaggagcaaacatccccatcatc
acagagcttgctaaatcagacaggctgctgaacgcagtgtgtgtgagacaagacaagagc
atcgggacgaacatccctatgatcactgagctggtgaatgactccaatgtgcagtttctg
gatcaggatgatgatgatgatccagacacggagttgtacctcactcagccttttgcctgc
ggaactgccttcgctgtcagtgtactcgactcactgatgagtgcgacttactttaacgat
aatatcctcacgctgatccggacgctggttacgggaggagccaccccggagctggagggc
ttattagcggaagaaaacgctttacgtggaggctacagtactcctcagaccctggccaat
agggacagatgccgggtggcacaactggctctctatgatgggcccttcgctgaccttggg
gatggtggttgctatggagatttgttctgcaaggcattaaagacgtacaatatgctgtgc
tttgggatataccggctaagagacgctcacctgagcgcgccaagccagtgcaccaagcgg
tacgtcatcaccaaccccccgtatgagtttgagctggtgcccacagacttgattttctgc
ctgatgcagtttgaccacaatgccggtcagtcccgggccactctgtcccactcgtcccac
tcttctcattcgtccagtaagaaaagctcctcggtccattcggtcaacaccagcacccgg
gccggccgcagcaagagccgagagccacgagacaagcagaatgcagcctggaagagtaga
ggcggggtcacagaagactcaataccaagataa
DBGET
integrated database retrieval system
