Astyanax mexicanus (Mexican tetra): 103038395
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Entry
103038395 CDS
T05042
Symbol
rb1cc1
Name
(RefSeq) RB1-inducible coiled-coil protein 1 isoform X1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
103038395 (rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
amex01009
]
103038395 (rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
amex04131
]
103038395 (rb1cc1)
03029 Mitochondrial biogenesis [BR:
amex03029
]
103038395 (rb1cc1)
Protein phosphatases and associated proteins [BR:
amex01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
103038395 (rb1cc1)
Membrane trafficking [BR:
amex04131
]
Autophagy
Autophagosome formation proteins
ULK complex
103038395 (rb1cc1)
Mitochondrial biogenesis [BR:
amex03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
103038395 (rb1cc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
ubiquitin
Motif
Other DBs
NCBI-GeneID:
103038395
NCBI-ProteinID:
XP_022522721
Ensembl:
ENSAMXG00000004228
LinkDB
All DBs
Position
6:161757..185018
Genome browser
AA seq
1612 aa
AA seq
DB search
MKLYVFQVNNGSTLTFDTELAVQTVLDLKHAIQAKYKIATQHQVLVVNGGECMVAERRVC
SYSAGTDTNPIFLFNKEMILCDRAPTIPKTTFSIENEMELKVEESLMMPAVFHTVASRTQ
LAVEMFEVAKKLCSFCERLVHDEHLQHQGWAAIMANLDDCTLSYQKLLWKFDTAYTNYQQ
DFEDIKLKLTKLGTAVSVMAKIPLLECLTRHSYRESVEKSCSPRPRTTEEDGDETSRRSD
VLSTPDQNRKSPAPVPVSEETGGGASLLPAEERLGGSVGLQEALEEEEEEAGDRAGALSF
NVTLLDWINVQDRPNDVEAVVRKCFDSINRLDPRIIQPFLSDCRETITKLDNQNMKAIKG
LEDRLYALDQMIASCKKLVNEQKELAQGFLANQKRAENLKDTSVLPDLCLSHANQLMIML
TNHRKLLDIKQKCTTAKQELANNLQVRLKWCCYVMLHADQDGEKLQALLRLLTELMERVR
VVEALSTVPQMYCLAVVEVVRRKMFIKHYREWANALVKDGKNLYEAEKAKRETFGKLFRK
SFLRNRLFRGLDSWPPTSFCTRKPRRFDFELPDISLTDLQYLKTCCPAEVQPFLRVPSLC
DFEPLHHHVEALHQLVQAAQSVDEMSQTITDLLSELKVSGSQSLQKPMALTPRSDSRTKT
TPTSSKTPPSLTLQAPPCQPLPVPAPLEDLSPDSIDAHTFDFETIGHPNMDPVLQQGSLD
LDSLAESPESDFMSAVNEFVIEENVTSPNPISDPTSPEMMVESLYSSVINAIDSKRIQDT
TTLERENSRIAVLKLSADRYRSAAEESQSNFRKVKDDLSHFRGLVLKEQRDFGFALKKMS
SEVSSIVNSIKTGQEEGLSEMQQNRLQSLKADHEKQILDLNQELEGNRSIVRDVQRAMLE
LEGLVERKEKELAQMEGERERSLEEVRNNHQKAVQELERKMSEQSEMLQDTLRSKEALSS
QLESLRLELECSKQKIRQEMENVEKNHLQELEERLRQEHQALLETLKRSNQSALDSLTKE
NQARLKDLSESFSAERKEREGRFKDYESRVAELADARCKLEVEMALKETEVEDLRLQYEE
AKAQREEVLRAEMSSQTRVLQEQVDALTQQLQKKNEEYELGLAELRALMRLEKDHCISEL
VDRHEEESTLLRHEFSTLKQKSQDAEKDLEDRLLKIQSEQDQHIASLRKEQDEELRSFQE
KEQDLQTIVSDLQAENALLSGRLEQERQEAQRRVEEEVESAKVMLNNALRDFELQKEELE
TELLGKVKLLEYQLEERQSTEKVAAAVGVCEMVQSVDCALQQRLEEEKASLLEKLELLEK
KKNEELQSLKTSLIAEQQTNFNTVLTREKLKKEQIVNELSEKLKELTLQQEKDKGLIETL
SEDRASILQEKKQLEEELNHLRCSALISSTYISSAPAAADVPGACGPGPAEVPGLCGLDS
ERLASVAALRDDERVDSAVEASMTTVHDNTLVLSEEKQRILILERTLHMKEEENKRLSQR
LMSQSMSSVSSRHSEKIAIRDFQVGDLVLIILDERHDNYVLFTVGPTLYFLHSESLTALD
LKPVTGATRRPWVLGKVMEKEYCQAKKAQNRFKVPLGTKFYRVKAVPWNKKV
NT seq
4839 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtatgtgtttcaggtcaataatggaagcacactcacgtttgacactgagctt
gcagtccaaacagttttggaccttaaacatgccattcaggccaagtataagattgccacg
cagcaccaggtgctggtggttaatggaggggagtgtatggtggcggagaggagagtctgc
agctacagtgctggaacagacaccaaccccatctttttattcaacaaagagatgatcctg
tgtgaccgagcaccaaccatccccaaaaccaccttctctatagagaatgagatggagctg
aaggtggaggagtccctcatgatgcctgctgtgtttcacaccgttgcctcacggacacaa
ctcgctgtggaaatgtttgaagttgccaagaagctctgttcattctgtgagcggctggtc
catgatgaacacttacagcaccagggctgggccgccatcatggccaacctggacgactgt
acgctgtcctatcagaaactgctgtggaaattcgacacggcgtacaccaattaccaacag
gactttgaggacatcaaactaaaactaaccaaacttggaacagcggtttcagtcatggct
aagatcccgctgctggagtgtctgacccgccacagttacagagagagcgtggagaagtcc
tgctccccgcggcccagaaccaccgaggaggacggagacgagacgtcccgccggtcggac
gtcctgtccactccagatcagaaccgcaaatctcccgctccggttccggtatcggaggag
acggggggcggggcttccctgcttcctgctgaggagcggctgggggggagcgtgggcctg
caggaggcgctggaggaggaggaggaggaggcgggggatcgggccggcgctctctccttt
aacgtcacgctgctggactggatcaacgttcaggaccgacccaacgacgtggaggcagta
gtgaggaagtgcttcgactccattaatcgactggatcctcgcattattcagccgtttctg
tcggactgtcgggagaccataacgaagctggataatcagaacatgaaggccattaagggg
ctggaggaccgattgtacgcactcgaccaaatgatcgccagttgcaaaaagctagttaac
gaacagaaggaacttgctcagggatttctagccaatcagaagagggctgaaaacctgaaa
gacacttcagttttgccagacctgtgtctgagtcacgccaaccagctgatgatcatgctg
accaatcacaggaagctgctggacatcaaacagaagtgcacaactgccaaacaggaactg
gccaacaacttgcaagtccgtctcaaatggtgctgctatgtgatgctccatgcggatcag
gacggggagaagctgcaggctctcctccggctgctgacggagctgatggagcgagtgcgg
gtggtggaggcgctcagcaccgtgccgcagatgtactgtctggccgtggtggaggtggtg
cgcaggaaaatgttcatcaaacactacagagagtgggcgaatgcgctggttaaagatggg
aaaaacctctatgaagcagagaaggccaaaagagagacatttgggaagttgttcagaaag
tcttttcttagaaatcgtttgtttcgaggactcgactcttggcctcccacatcgttttgt
actagaaagccccgcaggttcgactttgagcttccagacatctctctaactgacctgcag
tatctgaagacctgctgtcctgctgaagtgcaaccttttctcagggttccatcactgtgt
gactttgagcctctacaccatcatgtggaggctcttcatcagctcgtacaggcggctcag
agcgtagatgagatgtctcaaaccatcactgacctgctgagtgaattaaaggtttctgga
agtcagagtttacagaaacccatggctttaacacccagatcagacagcagaaccaagacc
acgcctacctcctctaaaactccgccctccctcacgctacaggctccgccctgtcaaccc
ctccccgttccagccccgttagaagacctgtctccggacagtatagacgctcacacgttc
gactttgagactataggccaccccaacatggatccggttctgcagcagggttctctggac
ctggactctctagcggagagcccggagtctgacttcatgtctgcggtgaacgagttcgtt
attgaggagaacgtgacgtcacccaatcccatcagtgacccgacgagcccggagatgatg
gtggagtcgctctactcctccgttattaacgctatagatagcaagcggattcaggacacc
accacgctggagcgggagaactccagaatcgccgtgctgaagctgagcgccgaccggtac
cgctccgctgctgaggagtctcagagcaacttcaggaaggtgaaggacgacctgtcgcac
ttccgcggtctcgttctgaaagagcagcgagacttcggcttcgctctgaagaagatgagc
agtgaggtgagcagcatagtgaacagcattaaaaccggtcaggaggaggggctcagtgag
atgcagcagaaccggctgcagagcctgaaagcagatcatgagaagcagatcctcgacctc
aaccaggagctggaggggaaccgcagcatcgtgagggacgttcagagagccatgctggag
ctggaagggctggtggagcgtaaggagaaagagctggctcagatggagggggaacgggag
cgctcgctggaggaggtgagaaataaccaccagaaggctgttcaggagctggagaggaag
atgtctgagcagagtgagatgttacaggatacgctgaggtccaaagaagctctttccagc
cagttggagagcttacgcctggagctggagtgcagcaagcagaaaatccgtcaggagatg
gagaatgtggagaagaaccacctccaagaactggaggagcgtctcagacaggagcaccaa
gccctactggagaccctgaaacgcagcaaccagagcgccctggactccctgaccaaggag
aaccaagccaggctgaaagatctgagcgagagcttctccgcagagcgtaaagagcgcgag
gggcggtttaaagactacgagtctcgcgtagccgaactcgccgacgctcgctgcaagctg
gaggtggagatggctctgaaggagacggaggtggaggacctgcgcctgcagtacgaagag
gctaaagcccagagagaggaggtcctgagagcagagatgtcctctcagaccagagtcctg
caggagcaggtggacgctctgacgcagcagctgcagaagaagaacgaggagtacgagctg
ggcctggccgagctgcgggcgctgatgcggctggagaaggaccactgcatctccgagctg
gtggaccgacacgaagaggagagcacgctcctccgtcacgagttctccaccctcaagcag
aagtctcaggacgctgagaaggacctggaggaccgtctgctgaagatccagagcgagcag
gaccagcacatcgccagcctgcggaaggagcaggacgaggagctgagatccttccaggag
aaagagcaggacctgcagaccatcgtcagtgacctgcaggcggagaacgccctcctgtcg
ggaagactggagcaggagcggcaggaggctcagagacgggtggaggaggaggtggagtcc
gctaaagtgatgctaaacaatgccttacgggactttgagctccagaaggaggagctggag
acggaactgttaggaaaagttaaactacttgaatatcaacttgaagaaagacaatccact
gaaaaagtggcagcagcagttggagtgtgtgagatggtgcagagtgtggactgtgctctg
cagcagaggctggaggaggagaaagcgtcgctgctggagaagctggagcttctggagaag
aagaagaacgaggagctgcagagcttaaaaacatcactaatagctgagcagcagactaat
tttaacactgtactcactcgggaaaagctgaaaaaggagcagatcgttaatgaactcagt
gaaaagcttaaggagttaacactacagcaggagaaagataaaggtttgatagagactctg
tcggaggaccgcgcctccatcctccaggagaagaagcagctggaggaggagctgaaccac
ctccgctgctccgccctcatctcctccacctatataagctccgcccccgcggcggcggac
gtgccgggagcgtgtgggccgggtccggctgaagtgccgggtctgtgtgggctggactcg
gagaggctggcgtcggtggcggcgctgcgagacgacgagagggtcgactccgccgtggag
gccagcatgaccaccgtgcatgataacacactggtgctgtcagaggagaagcagaggata
ctgatattagaaaggacgctgcatatgaaggaggaggagaataagaggctcagccaaaga
ctaatgtctcagagtatgtcctcagtttcctccagacactcagagaaaatcgctattcga
gattttcaggttggagatttggttctgatcattttagacgagagacacgataattacgtt
ctctttaccgtcggacccacgctctacttcctgcactcagagtccctcacagctctggac
ctcaaaccagtaacaggagctacgcggcggccgtgggttctggggaaggtgatggagaag
gaatattgtcaggcaaaaaaggcccagaaccggttcaaagttcctctggggactaaattc
taccgagtaaaagccgtgccatggaataagaaagtgtaa
DBGET
integrated database retrieval system
