Astyanax mexicanus (Mexican tetra): 103038567
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Entry
103038567 CDS
T05042
Symbol
arhgef12a
Name
(RefSeq) rho guanine nucleotide exchange factor 12 isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex04270
Vascular smooth muscle contraction
amex04625
C-type lectin receptor signaling pathway
amex04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
103038567 (arhgef12a)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
103038567 (arhgef12a)
09153 Circulatory system
04270 Vascular smooth muscle contraction
103038567 (arhgef12a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
amex04131
]
103038567 (arhgef12a)
Membrane trafficking [BR:
amex04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
103038567 (arhgef12a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PH_13
PDZ_2
SOS1_NGEF_PH
Chibby
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
103038567
NCBI-ProteinID:
XP_022530892
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All DBs
Position
18:complement(2242410..2332504)
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AA seq
1417 aa
AA seq
DB search
MSDIQPPAPERFPKKANRTSSILSRDHPPDKRPKSDKPAIPPVHDSAFDTTVLVQKSGCA
VPDGTPESCGLVQRCVIIQKDENGFGLTVSGDNPVFVQLVKEDGAAMRAGVQTGDRIIKV
NGTLVTHSNHVEVVKLIKSGSYVALTVLGRPPGLPQIPLSEVNLNLGPLEDHGAPAVTSL
HSPRQSRSSREYNAAKRASSPLTTWEENNVVHNLKADVLQRMLAKERLELQEMKEEYSRN
PTTKLLRDIQEAKKQIPLLQDQLSRATKDGLHLGDSEDGGVFDVDQANTDGFWNSVLKSY
HPASPESLCRRDSSSPKSTPRDSLNSCPSPETEDTSDLDSHLQHTAGTPSYRLNSQIIGA
EDEYFDSEQEQVNGQCSCFQSIELLKSRPAHLATFLHHVVSQFDPAPVLCYLYADLYKQT
NPKETRRIFLDFLMFFIDRGANLRVAVPESISSELERRRPELIPEDLHRQFIQTTQDTVL
PEVQRILEDFRQKRSMGLTLADGELAQLDMEQIRDSPAMERERSSAENIVSKIDDILLTS
LAAEEDKCTTIQYVILSYMKLLGVRSKEQRNLESKRVRINFLPKIKKTVQKSSNPEKEGE
EKVKKPRFNILGPSRWPSRVDAPSEAGRSVDGNKQRPQKQLSQPVMGTCDPAEGGRLRGS
QSSEGSDLVQNPACSSASPCSTIYSPASDTAFRDPDHGGSPSSVVPRHSDGVQAVEGLDG
PYPPCDYPPCGLEQLDEERDGDRLLVDVGTPKLSRRLEEVLSEDDGGGGGGGVYSDVDPP
NWQQLVGREVLAGLTPHEIKRQEVINELFYTERAHVRMLKVLDSVFYQKLSRDNILPPAD
IKNIFTNLEEIIQLHVNISEQMAAIRKKNDSSVVDQIGDDLLSWFSGGEEEKMRRAVGTF
CSNQPFALELIKSRQKKDQRFATFMQEAESNRLCRRLQLKDIIPAEMQRLTKYPLLLENI
AKYTDDAKEKDKVRRAADCCRKILNHVNQAVKESENKQHLEDYQRRLDFSSLKQSENPLI
AEFKNLDLTKRKLVHEGPLNWKLNKDKTVELYTLLLEDILVLLQKQDEKLILKCHSKNRA
GTVDTQHIFSPVIKLSTVLVRSVATDNRSFFVLSMSDNGAQIYELMAQTVSEQRTWQRQI
TQRAEAMKAKPHSVIPLPQSSGERESLESVSKLSKGPERVSAGSSDKGRGRSSAALHSCG
PASNPEEEEQGQDSGRDESSYLDPELLDGRDVYSLSSSCRAEEALKTLAALKQVLLTQLM
AQDDGERLGRSPGGRLLRTTSLRTPVEHSSGRSACRTQDAASGDTGFYEGSEDYAAGYLV
LEGYSGSRESSTDDDVHVGGMELGLSQSCAADSGISLRFSSASVESTCRLSRQVLTHLRS
LQANLNHLKEVESRYYSLLRQRQAGLSGDAGESKDKK
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacatacagccaccagcaccggagagatttcccaaaaaagcaaacagaaccagt
agcattctcagcagagatcatccccctgacaagagacctaaaagtgacaagcctgccatt
cctccggtgcatgactctgcttttgatacaacagtgctggtacagaagagtggatgtgca
gtacctgatggaacccctgagtcttgtggtctggtgcagagatgtgtgataattcagaaa
gatgagaacggctttgggttaactgtgagcggggacaaccctgtgtttgtgcagcttgtt
aaagaggatggcgctgcgatgcgtgctggagttcagactggagacaggatcattaaggtt
aatggaaccctggtgactcattcaaaccacgttgaagtggtgaaattaatcaaatcgggc
tcgtatgtagccctcacagtgttgggccggcctcccgggttaccccagatccctctttct
gaggttaacttgaatttagggcccctggaagatcatggagccccagcagtcacatccctt
cactctccaaggcagagccggagcagccgggagtacaacgctgcaaaacgggcatcctca
cccctaacaacatgggaggagaacaacgtcgtacacaacctgaaagcagacgtcctgcag
aggatgctggccaaagagcgcctggagctacaggagatgaaggaggaatacagcaggaac
cccacaactaaactactgagggacatccaggaagccaaaaaacaaatcccacttctgcag
gaccagctcagcagagccactaaggatggtctgcatttaggggacagtgaggatggtggt
gtgtttgatgttgaccaggccaatactgatggtttctggaactctgtcttaaaaagctac
catccggcctctccagaaagtttatgtcgaagagattcgagcagtccaaagagcacgccc
cgcgacagcctcaactcctgcccttcccccgagacagaggacacctctgacctggactcc
cacctccaacacactgcagggaccccctcctatcgcctgaactctcaaattattggagct
gaggacgaatactttgactcagaacaggagcaggtgaatggtcagtgtagctgctttcag
agtatagagctcctcaaatcgaggcccgctcacctagcgaccttcctacaccatgtggtc
tctcagtttgaccctgctcctgtgctttgttatctttatgccgacctctacaagcaaacc
aatcccaaagaaacccggcgcatctttttggacttcctcatgtttttcattgaccgaggg
gctaacttaagagtagctgtgcctgaatccatctcctctgaattggaacggcggaggcca
gagttaattcctgaggacttgcatcgacagtttatccagacaacgcaggacacagttctt
cctgaagtccagaggattctagaggacttcaggcagaagcgcagtatggggctgaccctg
gctgatggagaactggctcagctggacatggagcagattagagacagtcctgccatggag
agggaaagatccagcgccgagaacatcgtctccaagatagacgacatcctgttaacatcg
ctggctgcagaagaagataaatgcaccacaatacagtatgtgatcttaagctacatgaag
ctgctgggagtgaggagcaaagaacagcgcaacctggagtccaaacgtgtgcgcatcaac
ttcctgcccaagataaagaaaactgtacagaagagcagcaacccagagaaggagggggag
gagaaggtgaagaagccacgtttcaacatcctgggaccttcacgctggcccagccgtgtt
gatgcgccatctgaagctggtcgctctgtggatggaaataagcagaggccgcagaagcag
ctgtcccagccggtgatggggacgtgtgatccagcagagggcgggcgtttgcgggggagt
cagtccagcgagggatcagacctcgtccagaatcctgcttgcagttctgcatctccctgc
agcaccatctacagcccagcctcagacactgccttcagagacccagatcatgggggaagc
ccgtcctccgtggtccctcgtcacagtgatggtgtgcaggctgtggagggtctggatggc
ccttaccctccctgcgactaccccccctgcggcctggagcaactggatgaggagagagat
ggagacagactcctggtggatgtgggcacgcctaagctgagcaggaggctagaggaggtg
ctgagtgaggacgatggcggaggcggcggtggtggtgtgtactctgatgtggatcctccg
aattggcagcagctggtggggcgtgaggttctggctggactgactcctcacgagatcaag
agacaggaagtcattaacgagctgttctacactgagcgtgcacatgtacgcatgctgaaa
gtcctggacagcgtcttctaccaaaaactctccagagacaatatactgccccctgctgac
atcaaaaacatcttcaccaacctggaggagatcatccagctccatgtgaatatctcggag
cagatggcggcgatacgcaagaagaatgattcatcagttgtcgaccaaattggagatgat
ttgctgtcttggttcagcggaggagaggaggagaagatgaggagggctgtgggcacgttc
tgcagcaatcagcccttcgctctggagctcatcaagagccggcagaagaaggaccagcga
ttcgccaccttcatgcaggaggcggagagtaatcggttgtgtcggaggctgcagctcaag
gacatcattccagccgagatgcagaggctcacaaagtatccgctgctactggagaacatc
gccaagtacactgatgatgctaaagagaaagacaaggtgaggagagcagctgattgctgt
cggaagattctcaaccacgttaaccaggcagtaaaggagtctgaaaataagcagcatctg
gaagactaccagcggcgcctggacttctcgtccctgaagcagagtgagaatcccctcatc
gctgagtttaagaatttggatctgaccaagaggaagttggtccacgaaggtccactaaac
tggaagttaaacaaagacaagactgttgagttatacactctgctcctggaggacatcctt
gttctgttgcagaaacaggacgagaaactgattctaaagtgccacagtaagaaccgggct
ggaaccgtggacacgcagcacatattcagccctgttattaaacttagcactgtactggtg
cgctctgtggccacagacaacaggtccttctttgtgctctccatgtccgacaacggagct
cagatctatgagctgatggctcagacagtgtctgaacagagaacgtggcagaggcagatc
actcagcgagcagaagctatgaaggccaaaccccacagtgttatccccctgcctcagtcc
agtggagaaagagaaagcctggaatccgtcagtaaactcagtaaaggcccagagcgggtg
tctgctggcagctcagataaaggccgcggcagatcgtctgctgccctccacagctgcggc
cccgcctcgaaccctgaggaagaagagcagggtcaggacagcggccgcgacgaaagctct
tatctggatccagagcttctagacggacgagatgtgtactctctatcctcttcctgtaga
gcagaggaggcactgaaaaccttggccgcccttaagcaggtgctgttgacccagctgatg
gcgcaggacgacggggagaggcttgggaggtctcctgggggacgtctcctcaggaccacg
tctctgcgcacaccggtggagcacagctccggccgctcagcctgcaggacgcaggatgct
gcttcaggagacaccggcttctatgagggttctgaagactatgcagcaggttatctggtg
ctggagggctacagcgggtcgagggagagcagtactgatgatgatgttcatgttggagga
atggagctcggtttgtctcagagctgcgctgcagattcaggaatcagcctccggttctcc
tcggcctctgtggagagcacctgtcgcctcagtcggcaggttctaacacacctgcgttcc
ctgcaggccaaccttaaccacctcaaggaggtggagagcaggtattacagcctgttacgg
cagcggcaagcagggttatcaggagacgccggggagagcaaagataagaaatag
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