Astyanax mexicanus (Mexican tetra): 103038729
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Entry
103038729 CDS
T05042
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
103038729 (taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amex03021
]
103038729 (taf5)
03036 Chromosome and associated proteins [BR:
amex03036
]
103038729 (taf5)
Transcription machinery [BR:
amex03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
103038729 (taf5)
Coactivators
SAGA/TFTC/STAGA complex
103038729 (taf5)
Chromosome and associated proteins [BR:
amex03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
103038729 (taf5)
STAGA complex
103038729 (taf5)
TFTC complex
103038729 (taf5)
SAGA complex
103038729 (taf5)
SLIK complex
103038729 (taf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EML_2
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_HPS5
WD40_RFWD3
Beta-prop_SPT8
WD_LRWD1
Beta-prop_WDR19_1st
Beta-prop_DCAF12
Beta-prop_Nup120_160
VPS8_N
LisH_TPL
PROPPIN
CDK5RAP3
RAB3GAP2_N
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
103038729
NCBI-ProteinID:
XP_007259122
Ensembl:
ENSAMXG00000036058
UniProt:
A0A8B9GX09
LinkDB
All DBs
Position
21:complement(23225747..23236709)
Genome browser
AA seq
728 aa
AA seq
DB search
MAAVQDGGSELEGEKEPKPELMNDGSTAPAAAPSSRPEDQQTLLAVLQFLKRNKLIESVD
ALRREAGLADEPEEAPGSEAAGGAGGAAAGSGELGDAGALLSRVSGGSQSAAAPAPAKGG
DDQPDVSVVLSAYSQQGDPSLYQVYYSGLKKFIESVLDCHRAELSQLFYPLFVHMYLELV
YNNHESEAKSFFEKFNGDQECYYQDDLRVLSGLTKKEHMKGNETLLDFRTSRFVLRISRD
SYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKSQIDSMSGSLAGEAKREDNKTKV
YYGLLKEPEIEVPLDDEDEEAENEEGKPKKKKPKKDSMGSKSKKQDPNAPQQNRIPLPEL
KDSDKLDKIMYMKEATKRIRLGPESLPSICFYTFLNAYQGLTAVDFTDDSSLLAGGFADS
TVRVWSVTPKKLRKVKSAADLGMIDKESDDVLERIMDEKTASECKILYGHSGPVYGVSFS
PDRNYLLSSSEDGTIRLWSLQTFTCLVAYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLW
ATDHYQPLRMFAGHLADITCTRFHPNSNYVATGSADRTIRLWDVLNGHCVRVLTGHKGPI
HTLAFSPNGKYLASGSTDGRVLLWDIGHGLMIGELKGHTDTIYALRFSRDGEILASGSMD
NTVRLWDAIRAFDDVETDDFTAATGHVHLPDNSQELLLGTYLSKSTPVIHLHFTRRNLLL
SAGAYNSQ
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgtgcaggacggagggagcgagctggagggcgagaaagagccgaagcccgag
ctcatgaacgatggctccacggctccggctgcagcgccgagctcccggccggaggatcag
cagacgctgctggccgtgctgcagttcctcaagcggaacaagctgatcgagtcggtggac
gcgctgcggcgggaggcgggactggcggacgagccggaggaagctccggggagcgaggct
gcaggaggcgccggcggagccgcggcggggagcggggagctcggggatgcgggcgcgctg
ctcagccgggtgtctggaggctcacagagcgcggcggctccggctccggctaaaggagga
gatgaccagccggacgtcagcgtggttctgtcagcgtacagtcagcagggtgacccatcc
ttgtatcaggtctattacagcggtttgaagaagttcattgaatctgtgctggactgtcac
agggccgagctgtcgcagctcttttatccactcttcgtgcacatgtacctggagctggtc
tacaacaaccatgaaagtgaagccaagtctttttttgagaagtttaatggggaccaggag
tgttactatcaggacgacttgcgggtgctctcaggcctcaccaagaaggagcacatgaag
ggcaacgagacgttgctagacttccgcacgagccgcttcgttttgcggatctcccgcgac
tcctaccagctgctgaagaggcacctgcaggagcgacagaacaaccagatctggaacatc
attcaggagcatctctacatcgacatcttcgatggcatgcctcgcagcaagagccagata
gacagcatgtccggcagtttggcgggagaggccaaacgggaggacaataagaccaaggtg
tactatgggctgctaaaggagccggagatcgaggtccctttggatgacgaggacgaagag
gcggagaatgaagagggcaaacccaagaagaagaaacctaagaaagacagcatgggctca
aaaagcaagaaacaagatcctaatgcaccgcagcaaaacaggattcctcttccggagttg
aaggactctgacaagctggataaaatcatgtacatgaaagaagccaccaaaaggattcgg
ctaggaccagaaagcctgccctctatatgcttctacacgttcctcaatgcctatcagggt
ctgacagcagtggatttcactgacgactccagtctgttagcaggaggttttgccgattcc
acagtgcgcgtgtggagtgtcacacctaagaaactgcgcaaagtcaaatcagcagcagat
ctcggtatgatcgacaaggagtctgacgatgtactagaaaggataatggacgagaaaacc
gccagtgaatgcaagatcctgtacggccacagtggaccggtatacggcgtcagcttcagt
cctgacagaaactacctactgtccagctctgaagatggcacaatcaggctttggagttta
cagacgttcacctgcctggttgcgtataaaggacacaactacccagtgtgggacactcag
ttttctccatacggttactattttgtgtctggaggacacgacagagtggcacgcttgtgg
gcaactgaccactaccagccacttcgcatgtttgctggccatctcgctgacatcacctgc
acacgattccacccaaactccaactacgtggccacggggtcagctgaccgcactatccgc
ctctgggatgttttaaatggtcactgcgttcgcgtcttaacaggtcacaagggccccatt
cacactctggcattttcacctaatggaaagtacctagcgtctggatcgacggacggcagg
gttcttttatgggacatcggccacgggcttatgattggtgaactaaagggtcacacggac
acaatatatgctctcaggttcagcagagatggcgagatcctagcctcaggctctatggac
aatacagtacggttatgggatgccatcagggcttttgatgatgtagaaacagatgacttt
actgcagccacaggccatgttcatttacctgacaattcacaggagttattactgggaaca
tacctcagtaaatccacacccgtcatccacctccattttaccagacgcaacctgctacta
tctgctggtgcatacaactctcaatga
DBGET
integrated database retrieval system
