Astyanax mexicanus (Mexican tetra): 103038869
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Entry
103038869 CDS
T05042
Symbol
nfkb1
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex04010
MAPK signaling pathway
amex04210
Apoptosis
amex04218
Cellular senescence
amex04620
Toll-like receptor signaling pathway
amex04621
NOD-like receptor signaling pathway
amex04622
RIG-I-like receptor signaling pathway
amex04623
Cytosolic DNA-sensing pathway
amex04625
C-type lectin receptor signaling pathway
amex04920
Adipocytokine signaling pathway
amex05132
Salmonella infection
amex05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
103038869 (nfkb1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
103038869 (nfkb1)
04218 Cellular senescence
103038869 (nfkb1)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
103038869 (nfkb1)
04621 NOD-like receptor signaling pathway
103038869 (nfkb1)
04622 RIG-I-like receptor signaling pathway
103038869 (nfkb1)
04623 Cytosolic DNA-sensing pathway
103038869 (nfkb1)
04625 C-type lectin receptor signaling pathway
103038869 (nfkb1)
09152 Endocrine system
04920 Adipocytokine signaling pathway
103038869 (nfkb1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
103038869 (nfkb1)
09171 Infectious disease: bacterial
05132 Salmonella infection
103038869 (nfkb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
amex03000
]
103038869 (nfkb1)
Transcription factors [BR:
amex03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
103038869 (nfkb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_4
Ank_3
Ank_5
Death
Motif
Other DBs
NCBI-GeneID:
103038869
NCBI-ProteinID:
XP_049323949
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All DBs
Position
19:2203103..2241687
Genome browser
AA seq
940 aa
AA seq
DB search
MTEEDSYLHPEFCLDFAPAWSYQTDPHFQQPIPHSNTPRIDGPCLQIIEQPKQRGFRFRY
GCEGPSHGGLPGASSEKNRKTYPQVKICNYQGPAKVVVQLVTNTKLPQLHAHSLVGKQCE
KGVCIADLQPKDSCISFPNLGILHVTKKNVTKTLEDRMSEAFRMAYNCGVVIHPEIDSLQ
GETRIPRDLTEQHRMLISTAASHQAKDMDLSVVRLMFTAFLPDGEGGYTRRLDPVISEPI
YDSKAPNASNLKIVRMDRTAGCVTGGEEVYLLCDKVQKDDIQVRFYEDDETGIAWEAFGD
FSPTDVHRQFAIVFKTPKYRDQNLQKPISVFVQLKRKSDHETSEPKPFTYHPQIIDKEEV
QRKRQKTLPNFPDYGGAGGGGGGMFRGTGGGPATGGGHGGGGGGGHYYQGYSNFNNFNSG
YGFPPAMGGGGTSIKHATRGPVEDTDEDSDSDLDDDQGSAGAVQGYVQSGAAGVDEGSEG
SQELRPKECVFEPRLAELAERHACALFDYAVTGDARRLLAPQRPLMSTQDENGDTGLHLG
VIHSQTDAVKTLAEVISAIPGEDVLNMRNDLYQTPLHLAVVTQQKEAAEVLLTARADVAL
TDRNGNTALHLAAQQKEGEMVRLLLHHDNMLEMTSVPNTAGLCPLHLAVLANSLNSVRAL
LEGGASVEIQELTCGRTPLHLATERDNVSLAGCLLLEGDADVDSVTYNGSTPLHIAAGRG
SLKLSALLVAAGADPHKENYEPLFFRDEECCTTNEEEQEDEGYIPGTTPLNMAASPEVRE
ILNGKKYQPTTVFVPPQGDMRSLSVETKRALCQCLEESVGGWESLAHALGLGILTNAFCL
SPRPASTLLDSYEVSGGTVRELLSSLRSIGNRGAVSILQEHCVCEENSDNTHLTYTPPGR
VECEEGMRELKLAALDEGGVCDSGVETSFQRPSFSLADSL
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atgacggaagaggactcatatctacacccagagttctgtctagattttgctccagcgtgg
agttaccaaacggacccacatttccagcagcctattcctcactccaacacacccagaata
gatggaccctgtctccaaattattgaacaaccaaaacagcgaggtttcaggtttcgttat
ggctgtgaaggcccctcccatggtggactccccggagcctcgagtgagaagaacagaaag
acgtaccctcaggtcaagatctgtaattatcaaggtccagcgaaggtcgtggttcagctg
gtgaccaacaccaaactgccccagctgcacgcgcacagcctggtggggaagcagtgtgag
aagggcgtctgcatcgcagacctgcagcccaaagactcctgcatcagttttcctaattta
gggatcttgcacgtgactaaaaagaatgtgactaagactctggaggaccggatgagcgag
gcgttcaggatggcgtataactgtggagtagtgatccacccggaaatcgactctctccaa
ggagaaacacgaattccccgagatctcacagagcagcacaggatgctgatcagcactgca
gccagtcaccaggctaaagacatggacctgagcgtggtcagactgatgttcacagcgttt
ctgccggacggcgagggcggctacacccgcaggctggacccagtcatatccgaacccatt
tatgacagcaaggccccgaatgcttcgaatctgaagattgtgaggatggatcgcacagca
ggctgtgtgaccggaggagaggaggtctacctgctgtgtgataaagtccagaaagatgat
attcaggtgcgtttttacgaggatgacgagacgggaatcgcctgggaggcgtttggagat
ttctctcctacagatgttcaccgacagtttgccatcgtcttcaagacgcctaagtaccgc
gaccagaacctgcagaagcccatctcagtgttcgtccagctcaagaggaaatccgaccac
gagacgagcgagcccaaacccttcacttaccacccgcagatcatcgataaggaggaggtt
cagaggaagcggcagaagaccctgcccaacttcccggactacggaggtgcgggaggagga
ggtgggggcatgtttagaggaaccggaggcggtcctgctacagggggcgggcacggtgga
ggaggaggtggaggccactactaccaggggtattctaatttcaacaactttaactctggc
tacggttttccccccgccatgggtggaggcgggaccagcatcaagcatgcgactcgtggg
cctgtggaagacactgatgaggacagtgacagtgacctggatgatgatcagggttcagca
ggagccgtccagggctatgtccagtctggagctgctggggtggatgaggggagcgagggc
tcacaagagctcaggcctaaagagtgtgtgtttgagcctcggttagctgagctggcggag
agacatgcctgcgctctgtttgattatgctgtgaccggtgacgctcgcaggctgctggct
ccacagcgccccctaatgtccactcaggatgaaaacggagacacgggactccacctgggt
gtgatccacagtcagacggatgcagtgaagactctagcggaggtgatttcagctattcca
ggagaggatgtgcttaacatgaggaacgacctgtatcagacgccgctgcatctggcggtg
gtgactcagcagaaagaggcggcggaggtgttactgacggccagagcagacgtcgctctc
actgatcgcaacggaaacacagcgctgcatttagcagcccagcagaaagaaggagagatg
gtgcggttactgctgcaccacgacaacatgctggagatgaccagcgtacccaacacagca
ggtctgtgtccgctgcacctggctgtactggctaacagtctgaatagcgtgagggcgctg
ctggagggcggggctagtgtggagattcaggagctcacctgtggtcgcacgccgcttcac
ctagcaaccgaacgtgacaacgtgtccctcgcaggatgcctactgctggagggggatgct
gatgttgacagtgtcacatataatggctccacccctctccacatcgcagcggggcggggc
tcgctcaaactcagcgctctgctggtggcggcaggggcggaccctcataaagagaactat
gagccactgttcttcagagacgaggagtgctgcaccacaaacgaggaagagcaggaggat
gaggggtatataccagggactaccccgctcaacatggctgcatctcctgaggtgcgggaa
attctgaatggtaaaaagtaccagcccaccaccgtctttgtacctccacaaggagacatg
cgtagtctgagtgtggagacgaagcgggcgctgtgccaatgtctggaggagtcggtgggt
gggtgggagagtctggcacacgcactgggactcggcatcctcaccaacgccttctgcctc
agcccccggcccgcctccacgctgctggatagctatgaggtttcgggtgggacggttcga
gagctcttatcaagtctgaggagtattggtaacagaggcgctgtcagtatcctgcaggaa
cactgtgtgtgtgaagaaaacagcgacaacacacacctcacctacacaccgcctggtcgg
gtggagtgtgaggaggggatgcgggagctgaagttagctgctctggatgagggaggagtt
tgtgacagtggggtcgagacgtccttccagaggccgagtttcagtctggctgattcgctc
tga
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