Astyanax mexicanus (Mexican tetra): 103039012
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Entry
103039012 CDS
T05042
Name
(RefSeq) collagen alpha-1(XXV) chain
KO
K24356
collagen type XXV alpha
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
amex00536
]
103039012
Glycosaminoglycan binding proteins [BR:
amex00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103039012
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
103039012
NCBI-ProteinID:
XP_022534011
LinkDB
All DBs
Position
8:28529838..28848515
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AA seq
697 aa
AA seq
DB search
MKVLGMNEARQCAATAIMESSGSGANKPRRRHCLRAAVNGAPFVFSAVSVAFCVLLGVQN
NDVLNRVTELESARLSCPSSALSSEQINLAIQERVDELLAQRSYEQLARIRTARQTSPEC
NCPPGPPGKRGRRGRNGDPGPPGPPGPKGDKGDQGDQGPRMVFPKINHGFLSADQQLIKR
RLIKGDQGQAGPPGPPGPPGPPGPRGPPGDTGKDGPRGLTGLPGDPGNPGEVGPVGPEGP
PGLKGSIGLPGNPGSDGLKGEVGISGLDGIPGAKGERGDRGEKGDMGEDGQKGDIGEKGD
SGSSAAGIKGEPGEPGRSGQKGEPGLPGLPGLPGIKGEPGFLGPQGEPGLPGLPGTKGER
GESGPAGKGERGDIGPAGQKGAQGESGTPGLKGSKGDSGDKGDVGLMGPRGPPGDKGDQG
TTEIIDYNGNIQEALQKITTITVTGPPGPPGPLGPQGIKGDQGPPGLPGLDGERGYKGSK
GDMGMPGISGDKGAIGLPGLPGANGLKGDKGDAGLPGPQGPSIVGSPGAPGPHGPPGPMG
PHGFPGPKGEPGLHGVKGVRGEPGHKGDRGPMGLPGASGLDGKPGLRGMDGPIGASGPAG
PKGDRGEKGSAGEPGPRGPYGLPGAAGTPGLDGLPGLRGEKGDVGERGEKGFRGFKGEKG
EPGQPGLDGLDAPCQLGPDGLPMPGCWQKGVTPWLVA
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtactcggaatgaacgaggcgcgccagtgcgccgctaccgccatcatggagagc
agcggctcgggagcgaacaaaccgcggcggcggcactgtctgcgcgcggccgtcaacgga
gctccgttcgtgttctccgccgtgtccgtggctttctgcgtgctgctgggtgttcagaac
aacgacgtcctcaaccgagtgacggagctggagagcgcgcgtctgtcttgcccgtcctca
gcgctgtcaagcgagcagatcaacctggccattcaggagagagtggacgagctactggca
cagcgctcctacgaacagcttgcccggataaggacagcccgccagacttcacctgaatgc
aactgcccaccagggccaccagggaagcgaggaagaagagggcgcaacggagaccctgga
ccccctggtccaccgggtccaaaaggagacaagggtgatcaaggagaccaggggccgcgg
atggtcttccctaagatcaatcatggctttctttctgctgatcagcagctcattaagcgc
cggctcattaagggtgatcagggtcaagcaggcccaccgggacctcccggacctccaggc
cctcctggtcccaggggacccccaggggacactgggaaggatggccctagaggacttaca
gggctaccgggtgatcccggaaatccaggagaggtcggccctgtgggacctgagggccct
ccaggactcaagggttccattgggctgcctggcaatccaggtagtgacggattaaagggg
gaggttggtatatcaggattagatggaattcctggtgccaagggtgaaagaggagatcga
ggtgaaaagggtgacatgggagaagatggccagaagggtgacatcggtgagaagggtgat
tcagggtcatctgctgctggaattaagggtgaaccaggcgagccaggccgaagtggacaa
aagggagagccaggacttccagggctgcctggacttcccggaataaagggtgaacctggt
ttcctcggacctcagggtgaaccgggccttccgggactgccaggaacaaagggagagcga
ggagagtctgggccagcaggaaagggtgagcgtggagacattggaccagctggacagaag
ggagcacagggggaatctggaacaccaggcctcaaaggatccaagggggattcaggagat
aaaggagatgttggcctcatggggccaagaggcccaccaggagataaaggtgaccagggc
acaacagaaatcattgactacaatggaaacatccaggaagctcttcagaagataaccact
attacagtgacgggtccccctggacctcctggaccactcggaccacagggcatcaagggt
gatcaaggtcctccaggtcttccaggccttgatggagaaaggggttacaaaggttcaaaa
ggagacatgggcatgcctggtatatctggagataaaggagccataggattgcctggacta
ccaggtgccaatggtttaaagggagataaaggtgatgcgggcctacctggacctcaagga
ccatcaattgtaggatcccctggagcacctgggccacatggcccccctggtccaatgggc
ccacatggatttcctggaccaaagggggagccaggtttgcatggtgtaaaaggcgtgaga
ggggagccaggccacaagggtgatcgaggacccatgggcctccctggagcatctggcttg
gacggcaagccgggattaagggggatggatggaccaattggtgcttctggccctgcaggt
cctaaaggagacagaggtgagaaaggttctgctggtgagcctgggccaagaggaccctac
ggacttcctggtgctgctggaacaccaggcctggatgggttaccaggcttaaggggagag
aaaggcgacgtgggggaaagaggagaaaagggtttccggggctttaagggtgaaaagggc
gaaccaggccagcctggtctggatgggctggatgccccgtgccaattgggtccagatgga
ctaccgatgcctggctgctggcagaagggagtcacaccttggctggtggcctga
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