Astyanax mexicanus (Mexican tetra): 103039067
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Entry
103039067 CDS
T05042
Symbol
cltca
Name
(RefSeq) clathrin, heavy chain a (Hc) isoform X1
KO
K04646
clathrin heavy chain
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex04142
Lysosome
amex04144
Endocytosis
amex05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
103039067 (cltca)
04142 Lysosome
103039067 (cltca)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
103039067 (cltca)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
amex04131
]
103039067 (cltca)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
amex04147
]
103039067 (cltca)
Membrane trafficking [BR:
amex04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
103039067 (cltca)
Exosome [BR:
amex04147
]
Exosomal proteins
Proteins found in most exosomes
103039067 (cltca)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
103039067
NCBI-ProteinID:
XP_049325008
Ensembl:
ENSAMXG00000003787
LinkDB
All DBs
Position
20:complement(14262496..14316016)
Genome browser
AA seq
1688 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMADPNS
PIRRPISADSAIMNPASKVIALKAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVA
LVTDNAVYHWSMEGDSQPVKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVGA
MQLYSVDRKVSQPIEGHAASFAQFKMEGNTEESTLFCFAVRGQAGGKLHIIEVGTPPTGN
QPFPKKAVDVFFPPEAQNDFPVAMQISPKQDVVFLITKYGYIHLYDLETGTCIYMNRISG
ETIFVTAPYEATSGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGA
EELFARKFNNLFAGGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGI
LLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYL
RANVPNKVIQCFAETGQFPKIVLYAKKVGYTPDWIFLLRNVMRISPDQGLQFAQMLVQDE
EPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAIL
GNQMFTNYDRAHIAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLSV
EDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLTELFESFKSFEGLFYFLGSIVN
FSQDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDR
FDFVHDLVLYLYRNSLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQF
STDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPYY
DSRVVGKYCEKRDPHLACVAYERGQCDQELINVCNENSLFKSLSRYLVRRRDPELWASVL
LETNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSE
HRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISSELFEEAFAIFRKFDVNTS
AVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGLVKEAIDSYIKADDPSAYMEV
VQAADQSGNWEDLVKFLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQ
VGDRCYDEKMYEAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFAC
VDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTEL
AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN
HPTDAWKESQFKDIITKVANVELYYKAVQFYLEFKPLLLNDLLIVLSPRLDHSRAVNFFS
KVKQLPLVKPYLRSVQNHNNKSVNEALNNLFITEEDYQALRTSIDAYDNFDNIALAQRLE
KHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMQYASESKETELAEELLQWFLLE
DKKECFAACLFTCYDLLRPDVVLETAWRHNIMDFSMPYFIQVMREYLSKVDDSLHVFQVD
KLETSESLRKQEEQATETQPIVYGTPQLMLTAGPSVPVPPQQAYGYGYTAPASYGQAPQA
QPGFGYGM
NT seq
5067 nt
NT seq
+upstream
nt +downstream
nt
atggctcagattctgccgatcagatttcaggagcacctgcagctccaaaacttgggcatt
aacccagctaacatcgggttcagcaccctgacgatggagtctgataaattcatctgcatc
cgggagaaggttggagagcaggcgcaggtggtgattattgatatggccgacccaaacagc
cctatccgtcgacccatctctgcagacagcgccatcatgaacccagccagcaaagtcatc
gccctgaaagctgccaaaacccttcaaatttttaacattgagatgaagagcaagatgaag
gcccacaccatgacagatgatgtgactttctggaagtggatctctctgaataccgtagcc
cttgtgactgataacgctgtctaccattggagcatggagggagactcacagccggtcaaa
gtctttgatcgtcactccagtctggcaggctgccaaatcattaactaccgcaccgatgcc
aagcagaaatggctcctccttattggcatctcggctcagcaaaaccgtgttgtgggggca
atgcagctgtactctgtagacaggaaggtgtctcagcccattgagggccatgctgccagc
tttgctcagttcaaaatggaaggaaacacagaagagtcaactctgttctgctttgctgtc
aggggccaggctggtggaaagcttcatataattgaagtaggaacaccaccgactggcaat
cagccttttccaaagaaagccgtggacgtgttcttccctcctgaggctcagaatgacttt
ccagtggccatgcagatcagccccaaacaggacgtagtgttcctcatcaccaagtatggc
tacatccacctctatgacctggagacgggcacctgcatctacatgaacagaattagtggc
gagaccatttttgttacggctccttatgaggccacttctgggatcataggcgtcaacagg
aaaggacaggtcttgtcagtgtgtgtcgaggaggagaacatcatcccctacatcaccaac
gttctgcagaacccggacctggccctgaggatggctgtaaggaacaacctggccggagct
gaggagctattcgcccgcaagttcaacaacctgtttgctgggggcaactactctgaagct
gccaaagtggctgccaatgctccaaaggggattctgcgtactccggacaccatccggcgc
tttcagagcgtgccggctcagccaggccagacctctcctctgctgcagtattttggaatc
ttactggaccagggccagctcaacaagtttgagtcactggagctctgcaggcccgtcctg
cagcagggccgcaaacagctgttggagaaatggctcaaagaggacaagctggagtgttca
gaggagctcggagaccttgtgaaatctgtagatcccaccctggcactcagcgtctacttg
agggccaatgtccccaacaaagtcatccagtgctttgctgaaactggccagttccccaag
attgttttgtatgccaaaaaggtgggctacactccagactggatcttcctgttgaggaat
gtaatgcgaatcagtccagatcaaggccttcagtttgcgcagatgctggtgcaagacgag
gagccactggctgatatcacacagatcgtggatgtgtttatggagtataacctgattcag
cagtgcacctcattccttttggatgctctcaaaaacaaccgtccctcagaaggccctctc
cagacacgtctcctcgagatgaaccttatgcatgcacctcaggtcgctgatgcaatcttg
ggaaatcagatgttcacgaattatgaccgtgcccacattgcccagctgtgtgagaaagca
ggactgctgcagagagccctggagcactacacagacttgtatgacatcaaacgcgcggtt
gtacacacgcatctgctcaaccccgagtggttggtaaacttctttggctctctgtcggtg
gaggattcgctggaatgtctgagagccatgctgtccgcaaacatcagacaaaatcttcag
atttgtgttcaggtggcctccaaataccatgagcagctctccacccagtcgctcaccgag
ctatttgagtcctttaagagctttgagggtctcttctacttcctcggctcgattgtgaat
ttcagtcaggacccagaggttcatttcaaatacatccaggctgcctgcaagacgggtcag
atcaaggaggtggagcgaatctgcagagagagcaactgctacgatcctgaacgcgtcaag
aacttccttaaggaagctaaactcactgaccagctgcccctcatcattgtgtgtgaccgt
tttgacttcgtccatgatttggtgctctacctgtatcgcaacagcctccagaagtacatt
gagatctacgtgcagaaggtgaaccccagtcgtctgccagttgtgattggtggtctgttg
gatgtggactgttctgaggatgtgattaagaacctgatcctcgtggtgaggggccagttc
tccactgacgagctggtggctgaggtggagaagagaaacagactgaaactgctgctgccc
tggctggaggctcgcatccacgaaggctgtgaggagcccgctacccacaatgccttggct
aagatttacatcgacagcaacaataacccagagcgcttcttgcgggagaacccatactac
gacagccgtgttgtgggaaaatactgcgagaagagggacccccatctggcctgcgtagct
tacgagagaggccagtgtgaccaggagctgataaatgtgtgtaatgagaactccttattt
aagagtttgtctcgttatctggttcgccgccgggatcctgagctatgggctagcgtgctg
ctcgaaaccaacccatataggaggcctctgattgaccaggtggtgcagaccgccctgtca
gagactcaggacccagaggaggtgtctgtcacagtgaaggccttcatgacagctgacttg
ccaaatgaactcatagaacttctcgaaaagattgttttggacaactctgtattcagtgaa
cacagaaacctccagaacttgctgattttgacagccatcaaagccgaccgcacccgtgtc
atggagtatattaaccgcttggacaactacgatgctcctgatattgccaacatcgctatc
agcagcgaactctttgaggaggcctttgcgatcttcaggaaatttgatgtcaacacttca
gcagtgcaggttctgatcgaacacattggtaacctggaccgagcgtacgagtttgcggag
cgctgcaacgagccagctgtgtggagccagttggctaaggctcagctccagaaaggcctg
gtcaaagaggccatcgattcctacattaaggctgatgacccctctgcttatatggaggtg
gtgcaggcagctgatcagagtggtaactgggaggacttggtgaagttcctgcagatggct
cgtaaaaaggcgagagagtcctatgtggagacggagctgatctttgctcttgccaaaacc
aaccgactggctgagctggaagagttcattaatggtcctaacaatgcccacatccagcag
gttggtgatcgttgttatgatgagaagatgtacgaggctgcaaagttactctacaacaat
gtgtcgaactttggccgcctggcttccactttggttcacctcggagaataccaggctgcg
gtggatggagctcgcaaagctaatagcacacgtacatggaaggaggtgtgctttgcctgt
gtagacggcaaggagttcagactggctcagatgtgcggccttcatatcgtggtccatgca
gatgaactggaagagctgatcaactactaccaggaccgtggttactttgaagaactgatc
accatgctggaggcggctctgggactggagcgggctcacatgggcatgttcacagagctg
gccattctgtactctaaatttaagcctcagaagatgagggaacacctggagctcttttgg
tccagggtcaacatcccaaaggtgctgcgggcagcagagcaggctcatctgtgggcggaa
ctggtcttcctgtatgacaagtacgaggaatacgacaatgccatcatcaccatgatgaac
caccccacagatgcctggaaagaaagccagttcaaggacatcatcaccaaggtggccaat
gtggaactgtattacaaagcagtccagttttatcttgagttcaagcccttgttactgaat
gaccttctcatagtgctctcacccagactggaccactctcgcgcagtcaacttcttcagc
aaggttaagcagctccctctggtcaaaccctacttgcgatctgtacagaaccacaacaac
aagtctgtcaacgaagcacttaataacctcttcattacagaagaagactaccaggcactt
aggacgtccatagatgcgtatgataactttgacaacattgctctggctcagcgactggaa
aaacacgagctcattgagttcagaagaatcgcggcctacctcttcaaaggcaacaaccgc
tggaaacagagtgtggagctctgcaaaaaggacaaactctacaaggatgctatgcagtat
gcatcagagtcaaaggagacagagcttgcagaggagttgctgcagtggttcttgttggag
gacaagaaggaatgctttgctgcctgcctcttcacctgctacgaccttcttcgacccgat
gtggtactggagactgcctggaggcacaacatcatggacttctcaatgccatacttcatt
caggttatgcgggagtatctgagcaaggttgacgatagcctccatgtgttccaggtggac
aagctggagacttcggagtctttaaggaaacaggaggagcaggcaacagagacgcagccc
attgtttatggcacaccccagctgatgctgactgcaggccccagtgtacctgttccccca
cagcaggcttatggctacggttacacagcaccagccagttatggccaggctcctcaagct
cagcctggctttggttacggcatgtaa
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integrated database retrieval system
