Astyanax mexicanus (Mexican tetra): 103039198
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Entry
103039198 CDS
T05042
Symbol
ddx55
Name
(RefSeq) ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
amex03009
]
103039198 (ddx55)
Enzymes [BR:
amex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103039198 (ddx55)
Ribosome biogenesis [BR:
amex03009
]
Eukaryotic type
Pre-60S particles
Helicases
103039198 (ddx55)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF4217
ResIII
Helicase_C_2
SART-1
SBF_like
Motif
Other DBs
NCBI-GeneID:
103039198
NCBI-ProteinID:
XP_022536485
Ensembl:
ENSAMXG00000019924
LinkDB
All DBs
Position
20:complement(498493..506110)
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AA seq
601 aa
AA seq
DB search
MERVTEGRWDSLSVNLQDGIKRTLQKLGFTFMTPVQSACIPLFMSNKDIAAEAVTGSGKT
LAFVIPVLEILLKREEKLKKMQVGALIITPTRELAVQISEVMGQFLEEFPQFRQILLIGG
SNPINDVNNFKTHGANIVIGTPGRLEDMFRRKADGLDLASCMKALDVLVLDEADRLLDMG
FEASLNTILGFLPKQRRTGLFSATQTQELEKLVRAGLRNPVRITVKEKGVAASSAQKTPA
RLENYYTICRTEEKFNTLVAFLRQHTHEKQLVFFSTCACVEYFGKALEFLVKNVTILCIH
GKMKDKRNKIFSEFRQLKSGILVCTDVMARGIDIPDVNWVLQYDPPSSASSFVHRCGRTA
RIGNRGSALVFLLPMEESYVNFLSINQKCPLQLYPAVKDVENVLPDLKVLALGDRAVFER
GMRAFVSFIQAYAKHECSLIFRVKDLDFASLARGFALLRMPKMPELRGKSFPGFEEVPDT
DSIRYKDKNREKQRQKMLQQQKEKDKEAPPRKNFVRNQAWSKQKSKKDKKKKISAKRKLD
EGSDVDDEDMQELLNDTRLLKRLKKKKITEEDFDKQISAGGSSKHKRAGPSEEPSSEGED
E
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atggagcgcgtgacggagggaagatgggacagtttatctgtgaatcttcaggacgggata
aagcggaccctccagaaactgggctttaccttcatgaccccagttcagtccgcctgcatc
cctctgtttatgagtaataaagacattgctgctgaagcggtgacgggaagcgggaaaact
ctggcgtttgtgattcctgttctggaaattcttctaaagcgtgaagagaagctgaagaaa
atgcaggtcggtgctttgatcatcactccgacgcgagagctggctgtgcagatcagtgaa
gttatgggacaatttctagaagaatttcctcagttcagacagattcttttgattggtgga
agcaaccctattaatgacgtcaataactttaagactcatggggcgaacatcgtgatcggg
acccccggccgtctggaggacatgttcaggaggaaagctgatgggctggatctggccagc
tgtatgaaggctctggatgttctggttctggacgaggcggaccggttgctggatatggga
tttgaagcaagtctgaacactatactggggtttttgccgaagcagaggcgcactggtctt
ttctccgccactcagacgcaggaactggagaaactggtgcgggcgggactccggaaccca
gtccggatcacagtgaaggagaaaggagtcgccgcgagcagcgcacagaaaacccccgcc
aggctggagaactattatacaatctgcagaactgaagagaagtttaacacgctggtggcc
ttcctcagacaacacacacacgagaagcagctcgtcttcttcagtacatgtgcatgtgtg
gagtatttcggtaaagctctggagttcctggttaaaaatgtcaccattctttgcatccac
ggcaaaatgaaggacaagcggaacaaaatattctcagagtttcggcagctgaaaagtggg
atactggtgtgcacagatgtaatggcgagaggcatcgatatcccggacgtaaactgggtt
ctccagtacgaccctccaagcagcgcaagttctttcgtgcatcgctgtggaagaacagct
cgtattgggaaccgaggcagcgctctcgtcttcctgctcccaatggaggaatcgtacgtc
aattttctctccataaatcagaagtgtccgctgcagctgtaccccgcggtgaaggacgtg
gagaacgttctgccggacctgaaggttctggcgctgggagaccgggccgtgtttgagaga
gggatgcgggccttcgtctcgttcattcaggcctacgctaaacacgagtgcagcctcata
ttccgggtgaaagatctggattttgcctcgttagctcggggctttgctctcctccggatg
ccgaagatgcccgagctgagagggaagtcgtttccgggttttgaagaagttcccgacacc
gactcgattcggtacaaagacaagaacagagagaaacagaggcagaagatgctccagcaa
cagaaggagaaagataaagaagccccgcccaggaagaacttcgtcaggaaccaagcctgg
tccaaacagaaatccaaaaaggacaagaagaaaaagatatccgccaaaaggaagctggat
gagggatcagatgtggacgatgaggacatgcaggaacttctgaatgacactcggctactg
aagagactcaaaaagaagaaaatcactgaggaagactttgataagcagattagtgctgga
ggaagttccaagcataaacgagcaggaccctctgaagagccgagttcagaaggagaggat
gaataa
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integrated database retrieval system
