KEGG   Astyanax mexicanus (Mexican tetra): 103039313
Entry
103039313         CDS       T05042                                 
Symbol
exosc5
Name
(RefSeq) exosome complex component RRP46
  KO
K12590  exosome complex component RRP46
Organism
amex  Astyanax mexicanus (Mexican tetra)
Pathway
amex03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:amex00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103039313 (exosc5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:amex03019]
    103039313 (exosc5)
Messenger RNA biogenesis [BR:amex03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     103039313 (exosc5)
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 103039313
NCBI-ProteinID: XP_007231349
Ensembl: ENSAMXG00000034946
UniProt: A0A8B9JYI7
LinkDB
Position
9:complement(2324884..2331510)
AA seq 220 aa
MDQIETGSGSVLREYGSEQNLLSKPDGSATFLQGDTSVLAGVYGPAEVKVNKEIYDRATL
EVVVQPKVGMSSVRERAREQCVRETCEAVLLSTLHPRSSLALILQVVHDDGSLLSCCLNA
ACMALMDAGLPMGRLFCGVTCAIDSDSQIITDPTAQQERESRALMTFAIDSKERNVLMSS
TKGSFSVKELQQCIALSQKASEKIFQFYRDSVKRRYSKIL
NT seq 663 nt   +upstreamnt  +downstreamnt
atggatcagatagagacgggttcgggttcggttctgagggaatacgggagcgaacagaac
ctgctgtccaaaccggacggatcagcgaccttcctacagggggacaccagtgtgttggca
ggagtttatggacctgctgaagtgaaagtgaataaggagatctatgacagagcgactctg
gaggtggttgtccagcctaaagtgggcatgtcaagtgtgcgggagcgtgcgagggagcag
tgtgtgagggaaacgtgtgaggctgtcctgctgtccactcttcatcctcggtcctccctc
gcactcatcctccaggtggtgcacgacgacggctctctgctgtcgtgctgtctgaacgcc
gcctgcatggcgctgatggacgccgggctgccgatgggtcggctgttctgcggcgtgacc
tgcgccatcgactccgacagtcagatcatcacagaccccacggcgcagcaggagagggaa
agtcgagctctgatgacttttgctatcgacagtaaagagcgtaatgtcctgatgtcctcc
actaaaggttctttctcagttaaagagctgcagcagtgtatagccctcagccagaaggca
tctgagaagatattccagttttatagagattctgtaaagcggagatactcaaaaattctg
taa

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