Astyanax mexicanus (Mexican tetra): 103039469
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Entry
103039469 CDS
T05042
Symbol
rc3h1a
Name
(RefSeq) roquin-1a isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
amex03000
]
103039469 (rc3h1a)
04121 Ubiquitin system [BR:
amex04121
]
103039469 (rc3h1a)
Transcription factors [BR:
amex03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
103039469 (rc3h1a)
Ubiquitin system [BR:
amex04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
103039469 (rc3h1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-CCCH
zf-C3HC4
Prok-RING_4
zf-CCCH_4
zf-CCCH_UNK
Thiaminase_I-like_N
zf_CCCH_4
zf-C3HC4_2
Baculo_IE-1
FYVE
RING_XB3-XBAT31
U-box_ZFPL1
Motif
Other DBs
NCBI-GeneID:
103039469
NCBI-ProteinID:
XP_007240175
Ensembl:
ENSAMXG00000018071
UniProt:
A0A8B9LIL7
LinkDB
All DBs
Position
16:complement(16364481..16397425)
Genome browser
AA seq
1106 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEENARKPISLGCGHTVCKMCLNKLHRKACPFDQTTISTD
IELLPVNTALLQLVCGQVPKSQPVTLVRGAEDTKHYDEARTCVEELALYLKPLSNTRGVG
LGSATQSLLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ADIDPSPDAPAPTWEQLDKGLVAVKTVVHGLVDFIQNHSKKGGDPQQAPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLPTRKTLSQSLTQLNDMDMVCPSNLLPD
EGLGVEGLVHKPGLVTNGIIHVGPGSGLLISRGADPSYEPVRKLGKPESGGSLSAPDSPP
DSLDPMPKVMLPAPPHPRGSRESLASHKHLSTASRIAQIPQYPPHQLEGYYSDSRPPHSA
SQYEPSQYPAGNSYNYSHMHRYARNPGPPADPAYPDSYPLSYASERQYATPPSDPRYSYP
PHHDGGRRHPAYGGHLPPQSYTRDELGHRSPGPMDAPPPPQPQTAGASAYLPESSRDRYN
AQIYNHHGQSRSHSRAAYPRPQPSLDDLHRRRKEIMAQLEEVKVVSPPPFGSSSNLAPPY
EPSYSQEARGQSHYMEENSTAFESFREPDYAAQYSPWSCGTFVPYIGKDMKSKEGMAAGY
MEMQNVEKSLRDPALELQRRAPEVKDDDPIIPFGSLPTVSRFGAISRTSKSGYQPAGLMP
GHPAKHTASAVDYNYGNHGGWSEASYPQHQTMPSQGYFSERLPPAGPDREQLRMELQQVN
QQITQQTRSIESSSSVVAMQREPVSMAGQSAPVEWSTAGVSSEQLSLELHQVEREIGMRT
REMALEGHGMKYRCENGQSDHGMQREEHQLALSEGSNGSSSVVQDCGLGSSSMSSLTSKT
SSLSLSSDLVASSPDLSKNGVVHTCS
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atgcccgttcaagcgccacaatggacggagtttctgttgtgtcccatctgcacgcaaacg
ttcgaggagaatgcccgcaagcctatcagcttgggctgcggacacaccgtgtgcaagatg
tgcctgaacaagctgcaccgcaaggcctgccccttcgaccagaccaccatcagcaccgac
atcgagctgctgcctgtcaacaccgccctgctgcagctggtctgtggtcaggtgcccaag
tctcagcccgtcaccttggtgagaggagcagaagacaccaagcattatgacgaagctcgc
acctgtgtggaggagctggctctctacctcaaacccctcagcaacaccagaggtgtgggg
ttgggcagtgcaacccagagtcttctcagcaggcccatgcaaaggaaactggtgactcta
gtacactgccagctggtggaggaggagggtcgtatccgggccatgcgggctgctcgctct
ctaggggaacgcacagtgaccgagctcatcctgcagcaccaaaacccacagcagctctcc
tccaacctgtgggctgcagtccgagctcggggctgccagttcctcggccctgctatgcag
gaagaggccctgaagctcgtcttgttggcgttagaggatggatcagccctctcccgcaag
gttctggttttgtttgtggtccagaggctggagccccgctttcctcaggcttctaaaacc
agtataggacatgtggtgcagcttctttacagagcctcctgttttaaggtgactaagcga
gacgaggactcctctttaatgcagctgaaggaggagttccgcacgtacgaggctctgagg
agagagcacgactctcagatcgtccagattgccatggagggaggcttacgtatagctcct
gaccagtggtcctccctgctctatggagaccagtcccataagtcccacatgcagtccatc
atagataagctgcagaccccagcgtcctttgcccagagtgtgcaggagctcaccattgcc
ctgcagagaacaggagacccagccaacctcaaccgcctcagaccgcatttagagctgctg
gctgacatcgaccccagcccagatgccccggcaccaacatgggagcaacttgacaaagga
ctcgtagctgtaaagacggttgtgcacggcttagtggacttcatccagaaccacagcaag
aaaggaggagatccacagcaggcccctcagcacagtaaatacaagacctacatgtgtcga
gatatgaagcagaaaggaggttgtcccagaggagccagctgcacttttgcccattcccag
gaggagctggaaaagtatcgcaagatgaacaagcggttgcccaccaggaagaccttaagc
cagtccctgacgcagcttaatgacatggacatggtttgcccctcaaaccttcttcctgat
gagggtttgggtgtggagggtctggtccataaacctggacttgtcactaatggcatcata
catgtgggtcctggatccgggctgctgatctcacgaggtgcagatccttcatatgaacca
gtacgcaagctggggaagccggagagcggaggcagcctcagtgctccggattcacctcca
gactcattggatcccatgcctaaggtgatgttgcctgcacctcctcatcctagagggtcc
agggagagtctagctagccataaacacctgtctactgcctccagaattgcccagatacct
cagtaccctccacatcagctcgagggctattactcagactccagaccaccacattctgcc
tcccagtacgaaccttctcagtatcctgcagggaactcctacaattattcacacatgcat
cgctacgcccgtaaccctggtccccctgctgacccagcctacccagactcctatccactt
tcctatgcttcagaacgccagtatgcaactccaccctctgaccctcggtatagctaccca
ccgcatcacgacggcggccgccgccacccagcgtacggaggccacctcccaccccagtcc
tacacacgggatgagctggggcacaggagtccagggcctatggacgcacccccaccacca
cagccccaaacagcaggggcctccgcctaccttccagagtcatcacgagaccgatacaac
gctcagatctacaaccaccacggccagagcagatctcacagcagggctgcctaccctaga
ccacagccctccttggatgacctgcaccgtcgaagaaaggaaatcatggctcagctagaa
gaggttaaagttgtctcccctcctccttttggctcttcttcaaacctggccccaccttat
gaaccaagctacagccaagaagccagaggacaaagccattacatggaagagaactccact
gcattcgagagcttcagggagccagactacgctgctcagtactccccgtggtcatgtggc
acctttgttccatacatcggcaaggatatgaaatccaaagagggcatggctgcaggctac
atggaaatgcagaatgtagaaaagagcctgagagatcctgcattggagctgcagcgcagg
gcacctgaggtcaaagacgacgaccccatcattccgttcggctcactgcccactgtttcg
cgcttcggagccatctcccgcacgtccaaatctggctaccagcctgctggcctgatgcca
ggccacccagccaaacacactgccagtgcggttgattataactatggaaatcatggaggt
tggagtgaagcttcatacccacaacatcaaaccatgccatctcagggatacttcagtgaa
cgcctgccccctgctggcccggatcgggaacagctgaggatggaactacagcaggtcaac
caacagatcactcagcagactcggtctatagagagctccagcagtgtggtggctatgcag
agagagcctgtctctatggccggccagtccgctccagtggagtggtccacagctggcgtg
tccagtgagcagctgagcctggagctgcatcaggtggagagagagatcggcatgaggacg
agggagatggccttggagggccatgggatgaagtatagatgtgaaaatggacagagtgat
catggcatgcagcgagaggagcaccagctagccctcagcgagggctcaaatggctcgagt
tctgtggtgcaggactgcggtttgggcagcagcagcatgtcctctctgaccagcaagacg
tcctccctgagcctgtcatccgatctggtggcaagcagcccggacctgtcgaagaatggg
gtggttcacacatgttcctag
DBGET
integrated database retrieval system
